Job Description P39830 Confidence 95.44% Date Thu Jan 5 12:00:54 GMT 2012 Rank 364 Aligned Residues 110 % Identity 15% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.	.	.	.	.	.	.	450
Predicted Secondary structure																								.	.																																									.									.	.	.	.	.	.	.
Query SS confidence																								.	.																																									.									.	.	.	.	.	.	.
Query Sequence		P	V	L	F	A	L	L	E	K	Y	L	A	K	T	E	T	L	E	E	Q	T	L	.	.	E	E	A	I	E	E	E	K	Q	I	P	V	D	I	C	N	H	A	L	L	V	G	Y	G	R	V	G	S	L	L	G	E	K	L	L	A	S	D	I	P	.	L	V	V	I	E	T	S	R	.	.	.	.	.	.	.
Query Conservation																								.	.																																									.									.	.	.	.	.	.	.
Alig confidence																								.	.																																									.									.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	N	I	G	G	L	Q	Q	F	A	S	E	V	F	K	A	M	N	I	P	Q	I	R	N	P	C	L	P	S	Q	E	K	M	P	E	A	Y	S	A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T
Template Known Secondary structure																				T				B			T	T	S			G	G	G	S		G	G	G	G									S														T									S	S	S	S		S	T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
																451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470			.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	V	D	E	L	R	E	R	G	V	R	A	V	L	G	N	A	A	N	.	.	E	E	I	M	Q	L	A	H	L	E	C	A	K	W	L	I	L	T	I	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G	K	S	L	S	E	N	E	I	T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G
Template Known Secondary structure			T	S		T	T	T	S														T	T	T						S			B	S	T	T	S	B								T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions