Phyre 2 alignment of P76641 with d1k1da2

Job Description P76641
Confidence 99.52% Date Thu Jan 5 12:25:13 GMT 2012

Rank 85 Aligned Residues 288

% Identity 11% Template d1k1da2

SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases Hydantoinase (dihydropyrimidinase), catalytic domain

Resolution 3.01

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	77	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.																																																	.	.	.	.
Query SS confidence										.	.	.	.	.																																																	.	.	.	.
Query Sequence	G	F	V	D	T	H	I	H	Y	.	.	.	.	.	P	Q	S	E	M	V	G	A	Y	G	E	Q	L	L	E	W	L	N	K	H	T	F	P	T	E	R	R	Y	E	D	L	E	Y	A	R	E	M	S	A	F	F	I	K	Q	L	L	R	N	.	.	.	.	G	T	T	T	A	L	V	F	G	T	V	H	P	Q
Query Conservation										.	.	.	.	.																																																	.	.	.	.
Alig confidence										.	.	.	.	.																																																	.	.	.	.
Template Conservation
Template Sequence	G	G	I	D	P	H	T	H	L	D	M	P	L	G	G	T	V	T	K	D	D	F	E	S	G	T	I	A	A	A	F	G	G	T	T	T	I	I	D	F	C	L	T	N	K	G	E	P	L	K	K	A	I	E	T	W	H	N	K	A	N	G	K	A	V	I	D	Y	G	F	H	L	M	I	S	E	I	T	D	D
Template Known Secondary structure									S	S				S	S	S			S	S												T	T												T	T	S														T	T	T		S	S									S
Template Predicted Secondary structure
Template SS confidence
	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	S	V	D	A	L	F	E	A	A	S	H	I	N	M	R	M	I	A	G	K	V	M	M	D	R	N	A	P	D	Y	L	L	D	T	A	E	S	S	Y	H	Q	S	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	E	R	W	H	K	N	G	R	L	L	Y	A	I	T	P	R	F
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence	V	L	E	E	L	P	K	V	L	E	E	E	G	I	T	S	L	V	F	M	A	Y	K	N	V	F	Q	A	D	D	.	.	G	T	L	Y	C	T	L	L	A	A	K	E	L	G	A	L	V	M	V	H	A	E	N	G	D	V	I	D	Y	L	T	K	K	A	L	A	D	G	N	T	D	P	I	Y	H	A	L	T
Template Known Secondary structure											S	S				B			B	S	S	S	T	T	T	T	B				.	.														T		B				B																	T	T			S	T						T
Template Predicted Secondary structure																															.	.
Template SS confidence
	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence	A	P	T	S	S	P	E	Q	M	A	M	A	Q	R	L	K	E	E	Y	P	D	T	W	V	H	T	H	L	C	E	N	K	D	E	I	A	W	V	K	S	L	Y	P	D	H	D	G	Y	L	D	V	Y	H	Q	Y	G	L	T	G	K	N	C	V	F	A	H	C	V	H	L	E	E	K	E	W	D	R	L	S	E
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	P	P	E	L	E	G	E	A	T	G	R	A	C	Q	L	T	E	L	A	G	S	Q	L	Y	V	V	H	V	T	C	A	Q	A	V	E	K	I	A	E	A	R	N	.	.	.	.	.	.	.	.	.	.	.	K	G	L	D	V	W	G	E	T	C	P	Q	Y	L	V	L	D	Q	S	Y	L	E	K	P	N	F
Template Known Secondary structure	S																				T							S			S													.	.	.	.	.	.	.	.	.	.	.	T	T																G	G	G	G	T	S	S	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.												.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330																		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	K	S	S	I	A	F	C	P	T	S	N	L	Y	L	G	S	G	L	F	N	L	K	K	A	W	Q	K	K	V	K	V	G	M	G	T	D	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	F	N	M	L	Q	T	L	N	E	A	Y	K	V	L	Q	L	Q	G	Y	R
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.
Template Sequence	E	G	A	K	Y	V	W	S	P	P	.	.	L	R	E	K	W	H	Q	E	V	L	W	N	A	L	K	N	G	Q	L	Q	T	L	G	S	D	Q	C	S	F	D	F	K	G	Q	K	E	L	G	R	G	D	F	T	K	I	P	N	G	G	P	I	I	E	D	R	V	S	I	L	F	S	E	G	V	K	K	G	R
Template Known Secondary structure	G	G	G	G	G			S	S		.	.				T	T												T	S	S							B					T	T	T	T	G	G	G	G	S	S		G	G	G	S				B			T	T	T									T	G	G	G	T	S
Template Predicted Secondary structure											.	.
Template SS confidence
	281	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

	354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	A	Y	E	A	F	Y	L	A	T	L	G	G	A	K	S	L	G	L	D	D	L	I	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	T	L	N	Q	F	V	D	I	V	S	T	R	I	A	K	L	F	G	L	F	P	K	K	G	T
Template Known Secondary structure	S										T							T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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