Job Description P76641 Confidence 100.00% Date Thu Jan 5 12:25:13 GMT 2012 Rank 37 Aligned Residues 365 % Identity 18% Template c3ooqC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of amidohydrolase from thermotoga maritima msb8 Resolution 2.06 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	R	G	S	F	I	D	V	T	R	T	I	D	N	P	E	E	I	A	S	A	L	R	F	I	E	D	G	L	L	L	I	K	Q	G	K	V	E	W	F	G	E	W	E	N	G	K	H	Q	I	P	D	T	I	R	V	R	D	Y	R	G	K	L	I	V	P	G	F	V	D	T	H	I	H	Y	P	Q	S
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		I	L	F	K	N	A	T	V	F	P	I	T	S	.	.	.	.	.	.	.	.	.	.	.	.	R	P	F	K	G	D	V	L	V	S	N	G	K	V	E	K	V	G	E	N	I	E	D	.	.	.	.	.	P	D	A	E	I	V	D	L	T	G	K	F	L	F	P	G	F	V	D	A	H	S	H	I	G	L	F
Template Known Secondary structure												S	S	S	.	.	.	.	.	.	.	.	.	.	.	.											T	T							S					.	.	.	.	.	S	S	S						T	T														T	T	T	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.													20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.										.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.
Query Sequence		E	M	V	G	A	Y	G	E	Q	L	L	E	W	L	N	K	H	T	F	P	T	E	R	R	Y	E	D	L	E	Y	A	R	E	M	S	A	F	F	I	K	Q	L	L	R	N	G	T	T	T	A	L	V	F	G	T	V	H	P	Q	.	.	.	.	.	.	.	.	.	S	V	D	A	L	F	E	A	A	S	H	I
Query Conservation																																																													.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		E	E	G	V	G	Y	Y	Y	S	D	G	N	E	A	T	D	P	V	T	P	H	V	K	A	L	D	G	F	N	P	Q	D	P	A	.	.	.	.	I	E	R	A	L	A	G	G	V	T	S	V	X	I	V	P	G	S	A	N	P	V	G	G	Q	G	S	V	I	K	F	R	S	I	I	V	E	E	C	I	V	K
Template Known Secondary structure			T	T	S		G	G	G			S			T	T	S	S	B		T	T		B	G	G	G	G			T	T				.	.	.	.							T	T										S	S	S	S										S			S	S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		N	M	R	M	I	A	G	K	V	M	M	D	.	.	.	.	R	N	A	P	D	Y	L	L	D	T	A	E	S	S	Y	H	Q	S	K	E	L	I	E	R	W	H	K	N	G	R	L	L	Y	A	I	T	P	R	F	A	P	T	S	S	P	E	Q	M	A	M	A	Q	R	L	K	E	E	Y	P	D	T	W	V	H
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																																																											.
Template Conservation																																																																												.
Template Sequence		D	P	A	G	L	K	X	A	F	G	E	N	P	K	R	V	Y	G	E	R	K	Q	T	P	S	T	R	X	G	T	A	G	V	I	R	D	Y	F	T	K	V	K	N	Y	X	K	K	K	E	L	A	Q	K	E	G	K	E	F	T	E	T	D	L	K	X	E	V	G	E	X	V	L	R	K	.	K	I	P	A	R
Template Known Secondary structure											S										T	T		S		S	S																												T	T																		T	T	.	S	S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		T	H	L	C	E	N	K	D	E	I	A	W	V	K	S	L	Y	P	D	H	D	G	Y	L	D	V	Y	H	Q	Y	G	L	T	G	K	N	C	V	F	A	H	C	V	H	L	E	E	K	E	W	D	R	L	S	E	T	K	S	S	I	A	F	C	P	T	S	N	L	.	.	.	.	.	Y	L	G	S	G	L	F
Query Conservation																																																																						.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	H	A	H	R	A	D	D	I	L	T	A	I	R	I	A	E	E	F	G	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	I	E	H	G	T	E	A	Y	K	I	S	K	V	L	A	E	K	K	I	P	V	V	V	G	P	L	L	T	F	R	T	K	L	E	L	K	D	L	T	X	E
Template Known Secondary structure						S															T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	G	G	G	G							T	T									S	S				S	G	G	G	T	T			T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.																.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	K	K	A	W	Q	K	K	V	K	V	G	M	G	T	D	I	G	A	G	T	T	F	N	M	L	Q	T	L	N	E	A	Y	K	V	L	Q	L	Q	G	Y	R	L	S	A	Y	E	A	F	Y	L	A	T	L	G	G	A	K	S	L	G	L	D	D	L	I	G	N	F	L	P	G	K	E	A	D	F	V	V
Query Conservation
Alig confidence																											.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence		T	I	A	K	L	L	K	D	G	V	L	I	A	L	X	C	D	H	P	V	I	P	L	E	F	.	.	.	.	.	.	A	T	V	Q	A	A	T	A	X	R	Y	G	A	K	E	E	D	L	L	K	I	L	T	V	N	P	A	K	I	L	G	L	E	D	R	I	G	S	I	E	P	G	K	D	A	D	L	V	V
Template Known Secondary structure									T	T								T	T	T	T	S		G	G	G	.	.	.	.	.	.								G	G	G	G	T									T	T	T							T	T		T	T	T	S	S	S			T	T	S	B
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.							.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	P	T	A	T	P	L	Q	Q	L	R	Y	D	N	S	V	S	L	V	D	K	L	F	V	M	M	T	L	G	D	D	R	S	I	Y	R	T	Y	V	D	G	R	L	V	Y	E	R	N
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	S	G	H	P	F	D	X	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	E	R	V	Y	I	D	G	V	E	V	F	R	R	E
Template Known Secondary structure			S	S		T	T	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.																								.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.