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Job DescriptionP76641
Confidence100.00%DateThu Jan 5 12:25:13 GMT 2012
Rank6Aligned Residues395
% Identity27%Templatec3hpaB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of an amidohydrolase gi:44264246 from an2 evironmental sample of sargasso sea
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  HTLKAVRGSFIDVTRTIDNPEEIASALRFIEDGLLLIKQGKVEWFGEWENGKHQIPDTIRVRDYRGKLIVPGFVDTHIHY
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Template Sequence  KTLLVKHADVLVTMDDTR. . . . . . . . . RELRDAGLYIEDNRIVAVGPSAELPE. . . TADEVLDLRGHLVIPGLVNTHHHM
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TT
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Query Sequence  PQSEMVGAYGEQLLEWLNKHTFPTE. RRYEDLEYAREMSAFFIKQLLRNGTTTALVFGTVHPQ. . SVDALFEAASHINMR
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Template Sequence  YQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMR
Template Known Secondary structure  GGGGS
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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  MIAGKVMMDRNAPDYLLDTAESSYHQSKELIERWHKNGRLLYAITPRFAPTSSPEQMAMAQRLKEEYPDTWVHTHLCENK
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Template Sequence  FHASRGAMSEP. . . . . . . DILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREY. GVSLHTHLAENV
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   177..180....... ..190.........200.........210.........220.........230...... ...240........
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  DEIAWVKSLYPDHDGYLDVYHQYGLTGKNCVFAHCVHLEEKEWDRLSETKSSIAFCPTSNLYLGSGLFNLKKAWQKKVKV
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Template Sequence  NDI. . . . . . . . . AYTPAEYAEDLGWVGHDVWHAHCVQLDDAGIGLFARTGTGVAHCPCSNMRLASGIAPVKKMRLAGVPV
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TTT

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   323......330......... 340.........350.........360.........370.........380.........390.........
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Query Sequence  GMGTDIGAGTTFNMLQT. . . LNEAYKVLQLQGYRLSAYEAFYLATLGGAKSLGLDDLIGNFLPGKEADFVVMEPTATPLQ
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Template Sequence  GLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDI. GALKPGMAADFAAFDLRQPLFA
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   343......350.........360.........370.........380.........390......... 400.........410.........420.
 
   400.........410.........420.........430........
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Query Sequence  QLRYDNSVSLVDKLFVMMTLGDDRSIYRTYVDGRLVYER
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Template Sequence  G. . . . . . . ALHDPVAALVFC. APSQTAYTVVNGKVVVRE
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   422 .......430.... .....440.........450..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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