Job Description P76641 Confidence 100.00% Date Thu Jan 5 12:25:13 GMT 2012 Rank 27 Aligned Residues 369 % Identity 14% Template c3d6nA_ PDB info PDB header:hydrolase/transferase Chain: A: PDB Molecule:dihydroorotase; PDBTitle: crystal structure of aquifex dihydroorotase activated by aspartate2 transcarbamoylase Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	S	G	E	H	T	L	K	A	V	R	G	S	F	I	D	V	T	R	T	I	D	N	P	E	E	I	A	S	A	L	R	F	I	E	D	G	L	L	L	I	K	Q	G	K	V	E	W	F	G	E	W	E	N	G	K	H	Q	I	P	D	T	I	R	V	R	D	Y	R	G	K	L	I	V	P	G	F	V	D
Query Conservation
Alig confidence				.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation				.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		M	L	.	.	.	.	.	K	L	I	V	K	N	G	Y	V	I	D	P	S	Q	.	.	.	.	.	.	.	.	.	.	.	N	L	E	G	E	F	D	I	L	V	E	N	G	K	I	K	K	I	D	K	N	I	L	.	.	.	.	.	V	P	E	A	E	I	I	D	A	K	G	L	I	V	C	P	G	F	I	D
Template Known Secondary structure				.	.	.	.	.						S						G	G	G	.	.	.	.	.	.	.	.	.	.	.	T				S							T	T							S	S			.	.	.	.	.		T	T							T	T	S
Template Predicted Secondary structure				.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		1	.						.	.	.	.	.	.	.	10	.	.	.	.	.	.												.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		T	H	I	H	Y	P	Q	S	E	M	V	G	A	Y	G	E	Q	L	L	E	W	L	N	K	H	T	F	P	T	E	R	R	Y	E	D	L	E	Y	A	R	E	M	S	A	F	F	I	K	Q	L	L	R	N	G	T	T	T	A	L	V	F	G	T	.	.	.	.	.	V	H	P	Q	S	V	D	A	L	F	E	A
Query Conservation																																																																	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	V	H	L	R	D	P	G	Q	T	Y	K	E	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	G	S	R	C	A	V	A	G	G	F	T	T	I	V	C	M	P	N	T	N	P	P	I	D	N	T	T	V	V	N	Y	I	L	Q	K
Template Known Secondary structure								T	T	T		T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T								S		S	S	S		S		S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																												.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		A	S	H	I	N	M	R	M	I	A	G	K	V	M	M	D	R	N	A	P	D	Y	L	L	D	T	A	E	S	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	S	K	E	L	I	E	R	W	H	K	N	G	R	L	L	Y	A	I	T	P	R	F	A	P	T	S	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		S	K	S	V	G	L	C	R	V	L	P	T	G	T	I	T	K	G	R	K	G	K	E	I	A	D	F	Y	S	L	K	E	A	G	C	V	A	F	T	D	D	G	S	P	V	M	D	S	S	V	M	R	K	A	L	E	L	A	S	Q	L	G	V	P	I	M	D	H	C	E	D	D	K	L	A	Y	G	V	I	N
Template Known Secondary structure							S	S						B		S	B	G	G	G		S	S	S	B										T				B			T	T	S																		T	T										T	T	T	B		S	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
																		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	E	Q	M	A	M	A	Q	R	L	K	E	E	Y	P	D	T	W	V	H	T	H	L	C	E	N	K	D	E	I	A	W	V	K	S	L	Y	P	D	H	D	G	Y	L	D	V	Y	H	Q	Y	G	L	T	G	K	N	C	V	F	A	H	C	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	E	V	S	A	L	L	G	L	S	S	R	A	P	E	A	E	E	I	Q	I	A	R	D	G	I	L	A	Q	R	T	G	G	H	V	H	I	Q	H	V	S	T	K	L	S	L	E	I	I	E	F	F	K	E	K	G	V	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	C	E	V	N	P
Template Known Secondary structure		T	T																																																					T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.															.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330												.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	L	E	E	K	E	W	D	R	L	S	E	T	K	S	S	I	A	F	C	P	T	S	N	L	Y	L	G	S	G	L	F	N	L	K	K	A	W	Q	K	K	V	K	V	G	M	G	T	D	I	G	A	.	.	.	.	.	.	.	.	.	.	.	G	T	T	F	N	M	L	Q	T	L	N	E	A	Y	K	V	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		N	H	L	L	F	T	E	R	E	V	L	N	S	G	A	N	A	R	V	N	P	P	.	.	L	R	K	K	E	D	R	L	A	L	I	E	G	V	K	R	G	I	I	D	C	F	A	T	D	H	A	P	H	Q	T	F	E	K	E	L	V	E	F	A	M	P	G	I	I	G	L	Q	T	A	L	P	S	A	L	E
Template Known Secondary structure								T	T						G	G	G	G			S	S		.	.																T	T		S							B					G	G	G	S	S	S	G	G	G					B			T	T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	Q	G	Y	R	L	S	A	Y	E	A	F	Y	L	A	T	L	G	G	A	K	S	L	G	L	D	D	L	I	G	N	F	L	P	G	K	E	A	D	F	V	V	M	E	P	T	A	T	P	L	Q	Q	L	R	Y	D	N	S	V	S	L	V	D	K	L	F	V	M	M	T	L	G	D	D	R	S	I	Y	R
Query Conservation
Alig confidence																													.	.																																														.	.	.
Template Conservation																													.	.																																														.	.	.
Template Sequence		L	Y	R	K	G	I	I	S	L	K	K	L	I	E	M	F	T	I	N	P	A	R	I	I	G	V	D	.	.	L	G	T	L	K	L	G	S	P	A	D	I	T	I	F	D	P	N	K	E	W	I	L	N	E	E	T	N	L	S	K	S	R	N	T	P	L	W	G	K	V	L	K	G	K	.	.	.	V	I	Y
Template Known Secondary structure					T	T	S	S								T	T	T								T		S	.	.		S				T	T	S	B															S	T	T	T			S	S					T	T	T	T							.	.	.
Template Predicted Secondary structure																													.	.																																														.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.				.	410	.
		428	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	V	D	G	R	L	V	Y	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	K	D	G	K	M	V	Y	K	D
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.