Job Description P76641 Confidence 99.98% Date Thu Jan 5 12:25:13 GMT 2012 Rank 53 Aligned Residues 357 % Identity 15% Template c2ogjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dihydroorotase; PDBTitle: crystal structure of a dihydroorotase Resolution 2.62 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		L	K	A	V	R	G	S	F	I	D	V	T	R	T	I	D	N	P	E	E	I	A	S	A	L	R	F	I	E	D	G	L	L	L	I	.	K	Q	G	K	V	E	W	F	G	E	W	E	N	G	K	H	Q	I	P	D	T	I	R	V	R	D	Y	R	G	K	L	I	V	P	G	F	V	D	T	H	I	H	Y	P
Query Conservation																																					.
Alig confidence								.	.													.	.	.	.	.	.	.	.	.	.	.	.				.														.	.	.	.	.	.
Template Conservation								.	.													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Sequence		P	I	L	L	T	N	.	.	V	K	P	V	G	F	S	Q	S	S	T	D	.	.	.	.	.	.	.	.	.	.	.	.	I	L	I	G	G	D	G	K	I	A	A	V	G	S	A	L	Q	.	.	.	.	.	.	A	P	A	D	T	Q	R	I	D	A	A	F	I	S	P	G	W	V	D	L	H	V	H	I	W
Template Known Secondary structure								.	.										S			.	.	.	.	.	.	.	.	.	.	.	.					T	T	S	B						S	S			.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure								.	.													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.													.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50							.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	E	M	V	G	A	Y	G	E	Q	L	L	E	W	L	N	K	H	T	F	P	T	E	R	R	Y	E	D	L	E	Y	A	R	E	M	S	A	F	F	I	K	Q	L	L	R	N	G	T	T	T	A	L	V	F	G	T	V	H	P	Q	S	V	D	A	L	F	E	A	A	S	H	I	N	M	R	M	I	A	G
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	G	G	T	D	I	S	I	R	P	S	E	C	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	G	V	T	T	L	V	D	A	G	S	A	G	E	A	N	F	H	G	F	R	E	Y	I	I	E	P	S	R	E	R	I	K	A
Template Known Secondary structure		T	T	T	S	S	S				G	G	G	S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T												G	G	G	S	T	T					T	T	T	T		S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.																															.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		167	.	.	170	.	.	.							.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		K	V	M	M	D	R	N	.	.	.	.	.	.	A	P	D	Y	L	L	D	T	A	E	S	S	Y	H	Q	S	K	E	L	I	E	R	W	H	K	N	G	R	L	L	Y	A	I	T	P	R	F	A	P	T	S	S	P	E	Q	M	A	M	A	Q	R	L	K	E	E	Y	P	D	T	W	V	H	T	H	L	C	E
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																																																									.
Template Conservation																																																																							.
Template Sequence		F	L	N	L	G	S	I	G	L	V	A	C	N	R	V	P	E	L	R	D	I	K	D	I	D	L	D	R	I	L	E	C	Y	A	E	N	S	E	H	I	V	G	L	V	R	A	S	H	V	I	T	G	S	W	G	V	T	P	V	K	L	G	K	K	I	A	K	I	L	.	K	V	P	X	X	V	H	V	G	E
Template Known Secondary structure					S	S	T	T	T	T	T	T	T	T	T	S		S		S	S	G	G	G												T	T	T	T	T								S					T	T			S														.	T									S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		N	K	D	E	I	A	W	V	K	S	L	Y	P	D	H	D	G	Y	L	D	V	Y	H	Q	Y	G	L	T	G	K	N	C	V	F	A	H	C	V	H	L	E	E	K	E	W	D	R	L	S	E	T	K	S	S	I	A	F	C	P	T	S	N	L	Y	L	G	S	G	L	F	N	L	K	K	A	W	Q	K	K	.
Query Conservation																																																																																	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																																																			.
Template Conservation																					.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	A	L	Y	D	E	V	L	E	I	L	G	P	G	D	V	V	T	.	.	.	.	.	.	.	.	.	.	H	C	F	N	G	K	S	G	S	S	I	X	E	D	E	D	L	F	N	L	A	E	R	C	E	G	I	R	L	D	I	G	H	G	G	A	S	F	S	F	K	V	A	E	A	A	I	A	R	G	L
Template Known Secondary structure		T	T	S											T	T					.	.	.	.	.	.	.	.	.	.	S	T	B				T	T	T		S	S	S																					S	S	S	S	B											T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230											.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	V	G	M	G	T	D	I	G	A	G	T	T	F	N	M	L	Q	T	L	N	E	A	Y	K	V	L	Q	L	Q	G	Y	R	L	S	A	Y	E	A	F	Y	L	A	T	L	G	G	A	K	S	L	G	L	D	D	L	I	G	N	F	L	P	G	K	E	A	D	F	V	V	M	E	P	T	A	T	P	L	Q
Query Conservation
Alig confidence																			.	.																																							.
Template Conservation																			.	.																																							.
Template Sequence		L	P	F	S	I	S	T	D	L	H	G	H	S	X	N	F	P	.	.	V	W	D	L	A	T	T	X	S	K	L	L	S	V	D	X	P	F	E	N	V	V	E	A	V	T	R	N	P	A	S	V	I	R	L	D	X	E	.	N	R	L	D	V	G	Q	R	A	D	F	T	V	F	D	L	V	D	A	D	L	E
Template Known Secondary structure				S						B	S					T	T	T	.	.														T	T									T	T	T							T	T				T	.	T	T	T	S	T	T	S	B
Template Predicted Secondary structure																			.	.																																							.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	R	Y	D	N	S	V	S	L	V	D	K	L	F	V	M	M	T	L	G	D	D	R	S	I	Y	R	T	Y	V	D	G	R	L	V	Y	E
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	D	S	N	G	D	V	S	R	L	K	R	L	F	.	.	.	.	.	.	.	.	.	E	P	R	Y	A	V	I	G	A	E	A	I	A	A
Template Known Secondary structure					T	T	S										.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.										.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low