Phyre 2 alignment of P76641 with c2imrA

Job Description P76641
Confidence 100.00% Date Thu Jan 5 12:25:13 GMT 2012

Rank 43 Aligned Residues 336

% Identity 17% Template c2imrA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dr_0824; PDBTitle: crystal structure of amidohydrolase dr_0824 from2 deinococcus radiodurans

Resolution 1.78 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	I	E	D	G	L	L	L	I	K	Q	G	K	V	E	W	F	G	E	W	E	N	G	K	H	Q	I	P	D	T	I	R	V	R	D	Y	R	G	K	L	I	V	P	G	F	V	D	T	H	I	H	Y	P	Q	S	E	M	V	G	A	Y	G	E	Q	L	L	E	W	L	N	K	H	T	F	P	T	E	R	R	Y
Query Conservation
Alig confidence																											.	.																																																			.	.
Template Conservation																											.	.																																																			.	.
Template Sequence	A	Q	S	P	G	G	V	V	V	V	G	E	T	V	A	A	A	G	H	P	D	E	L	R	R	Q	.	.	Y	P	H	A	A	E	E	R	A	G	A	V	I	A	P	P	P	V	N	A	H	T	H	L	D	M	S	A	Y	E	F	Q	A	L	P	Y	F	Q	W	I	P	E	V	V	I	R	G	R	H	L	.	.
Template Known Secondary structure			S	S							T	T															.	.		T	T								S			S	S									S	S														T	S								T	T		.	.
Template Predicted Secondary structure																											.	.																																																			.	.
Template SS confidence
	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

	114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	D	L	E	Y	A	R	E	M	S	A	F	F	I	K	Q	L	L	R	N	G	T	T	T	A	L	V	F	G	T	V	H	P	Q	S	V	D	A	L	F	E	A	A	S	H	I	N	M	R	M	I	A	G	K	V	M	M	D	R	N	A	P	D	Y	L	L	D	T	A	E	S	S	Y	H	Q	S	K	E	L	I
Query Conservation
Alig confidence	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation	.	.	.	.																																				.	.	.	.	.	.	.
Template Sequence	.	.	.	.	R	G	V	A	A	A	Q	A	G	A	D	T	L	T	R	L	G	A	G	G	V	G	D	I	V	W	A	P	E	V	M	D	A	L	L	.	.	.	.	.	.	.	A	R	E	D	L	S	G	T	L	Y	F	E	V	L	N	P	F	P	D	K	A	D	E	V	F	A	A	A	R	T	H	L	E	R
Template Known Secondary structure	.	.	.	.																T	T										S									.	.	.	.	.	.	.	T		T	T											B			G	G	G
Template Predicted Secondary structure	.	.	.	.																																				.	.	.	.	.	.	.
Template SS confidence
					127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	R	W	H	K	N	G	R	L	L	Y	A	I	T	P	R	F	A	P	T	S	S	P	E	Q	M	A	M	A	Q	R	L	K	E	E	Y	P	D	T	W	V	H	T	H	L	C	E	N	K	D	E	I	A	W	V	K	S	L	Y	P	D	H	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence	W	R	R	L	E	R	P	G	L	R	L	G	L	S	P	H	T	P	F	T	V	S	H	R	L	M	R	L	L	S	D	Y	A	A	G	E	.	G	L	P	L	Q	I	H	V	A	E	H	P	T	E	L	E	M	F	R	T	G	G	G	P	L	W	D	N	R	M	P	A	L	Y	P	H	T	L	A	E	V	I	G
Template Known Secondary structure			T	T		B	T	T										S	S	S	B																.	T			B					S		S										S		S	T	T	G	G	G	S		G	G	G	S		S	S						T
Template Predicted Secondary structure																																					.
Template SS confidence
	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

									258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	Y	L	D	V	Y	H	Q	Y	G	L	T	G	K	N	C	V	F	A	H	C	V	H	L	E	E	K	E	W	D	R	L	S	E	T	K	S	S	I	A	F	C	P	T	S	N	L	Y	L	G	S	G	L	F	N	L	K	K	A	W	Q	K	K	V	K	V	G	M	G	T	D	I	G
Query Conservation	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	E	P	G	P	D	L	T	P	V	R	Y	L	D	E	L	G	V	L	A	A	R	P	T	L	V	H	M	V	N	V	T	P	D	D	I	A	R	V	A	R	A	G	C	A	V	V	T	C	P	R	S	N	H	H	L	E	C	G	T	F	D	W	P	A	F	A	A	A	G	V	E	V	A	L	G	T	D	S	V
Template Known Secondary structure	S				T	T											T		G	G	G									S													T													T	T												T	T
Template Predicted Secondary structure
Template SS confidence
	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																												.	.
Query SS confidence			.																																												.	.
Query Sequence	A	G	.	T	T	F	N	M	L	Q	T	L	N	E	A	Y	K	V	L	Q	L	Q	G	Y	R	L	S	A	Y	E	A	F	Y	L	A	T	L	G	G	A	K	S	L	G	L	D	.	.	D	L	I	G	N	F	L	P	G	K	E	A	D	F	V
Query Conservation			.																																												.	.
Alig confidence			.																	.	.	.	.																								.	.
Template Conservation																				.	.	.	.
Template Sequence	A	S	G	E	T	L	N	V	R	E	E	V	T	F	A	R	Q	L	Y	.	.	.	.	P	G	L	D	P	R	V	L	V	R	A	A	V	K	G	G	Q	R	V	V	G	T	P	F	L	R	R	G	E	T	W	Q	E	G	F	R	W	E	L	S
Template Known Secondary structure				S		S		T												.	.	.	.	T	T	S																							S	T	T	S	B			G	G	G	B	G	G	G
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
	355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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