Job Description P76641 Confidence 100.00% Date Thu Jan 5 12:25:13 GMT 2012 Rank 10 Aligned Residues 378 % Identity 21% Template c1p1mA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm0936; PDBTitle: structure of thermotoga maritima amidohydrolase tm09362 bound to ni and methionine Resolution 1.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	G	S	F	I	D	V	T	R	T	I	D	N	P	E	E	I	A	S	A	L	R	F	I	E	D	G	L	L	L	I	K	Q	G	K	V	E	W	F	G	E	W	E	N	G	K	H	Q	I	P	D	T	I	R	V	R	D	Y	R	G	K	L	I	V	P	G	F	V	D	T	H	I	H	Y	P	Q	S	E
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		I	I	G	N	C	L	I	L	K	D	F	S	S	E	.	.	.	.	.	.	.	.	.	.	.	P	F	W	G	A	V	E	I	E	N	G	T	I	K	R	V	L	Q	.	.	.	.	.	.	.	.	G	E	V	K	V	D	L	D	L	S	G	K	L	V	M	P	A	L	F	N	T	H	T	H	A	P	M	T	L
Template Known Secondary structure											S	T	T	S		.	.	.	.	.	.	.	.	.	.	.										T	T								.	.	.	.	.	.	.	.	S	S				S				T	T														G	G	G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.												.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.									.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	G	A	Y	G	E	Q	L	L	E	W	L	N	K	H	T	F	P	T	E	R	R	Y	E	D	L	E	Y	A	R	E	M	S	A	F	F	I	K	Q	L	L	R	N	G	T	T	T	A	L	V	F	G	T	V	H	P	Q	S	V	D	A	L	F	E	A	A	S	H	I	N	M	R	M	I	A	G	K	V	M
Query Conservation
Alig confidence																																																									.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		L	R	G	V	A	E	D	L	S	F	E	E	W	L	F	S	K	V	L	P	I	E	D	R	L	T	E	K	M	A	Y	Y	G	T	I	L	A	Q	M	E	M	A	R	H	G	I	A	G	F	V	D	M	Y	F	H	.	.	.	.	E	E	W	I	A	K	A	V	R	D	F	G	M	R	A	L	L	T	R	G	L
Template Known Secondary structure		G	T	T	S	S		S									T	T						T	T																			T	T	T									S	S	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	R	N	A	P	D	Y	L	L	D	T	A	E	S	S	Y	H	Q	S	K	E	L	I	E	R	W	H	K	N	G	R	L	L	Y	A	I	T	P	R	F	A	P	T	S	S	P	E	Q	M	A	M	A	Q	R	L	K	E	E	Y	P	D	T	W	V	H	T	H	L	C	E	N	K	D	E	I	A	W	V	K
Query Conservation
Alig confidence																			.	.	.	.	.																																							.													.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.																																							.													.	.	.	.	.	.	.
Template Sequence		V	D	S	N	G	D	D	G	G	R	L	E	E	N	L	K	L	.	.	.	.	.	Y	N	E	W	N	G	F	E	G	R	I	F	V	G	F	G	P	H	S	P	Y	L	C	S	E	E	Y	L	K	R	V	F	D	T	A	K	S	L	.	N	A	P	V	T	I	H	L	Y	E	T	S	.	.	.	.	.	.	.
Template Known Secondary structure				B	T	T	B		T	T									.	.	.	.	.					T	T	G	G	G	T										T	T	T	S															T	.	T								S		S	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.																																							.													.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	Y	P	D	H	D	G	Y	L	D	V	Y	H	Q	Y	G	L	T	G	K	N	C	V	F	A	H	C	V	H	L	E	E	K	E	W	D	R	L	S	E	T	K	S	S	I	A	F	C	P	T	S	N	L	Y	L	G	S	G	L	F	N	L	K	K	A	W	Q	K	K	V	K	V	G	M	G	T	D	I	G
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	K	E	E	Y	D	L	E	D	I	L	N	I	G	L	K	E	V	K	T	I	A	A	H	C	V	H	L	P	E	R	Y	F	G	V	L	K	D	I	P	F	F	V	S	H	N	P	A	S	N	L	K	L	G	N	G	I	A	P	V	Q	R	M	I	E	H	G	M	K	V	T	L	G	T	D	G	A
Template Known Secondary structure		.	.	.	.	T					T					T	T	T	T	T	T	S								T	T			G	G	G	T	T	T	T	T	T	S	S													T	T												T	T										T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		A	G	T	T	F	N	M	.	.	L	Q	T	L	N	E	A	Y	K	V	L	Q	L	Q	G	Y	R	L	S	A	Y	E	A	F	Y	L	A	T	L	G	G	A	K	S	L	G	L	D	D	L	I	G	N	F	L	P	G	K	E	A	D	F	V	V	M	E	P	T	A	T	P	L	Q	Q	L	R	Y	D	N	S	V
Query Conservation									.	.
Alig confidence									.	.																																								.	.
Template Conservation																																																		.	.
Template Sequence		A	S	N	N	S	L	N	L	F	F	E	M	R	L	A	S	L	L	Q	K	A	Q	N	P	R	N	L	D	V	N	T	C	L	K	M	V	T	Y	D	G	A	Q	A	M	G	F	K	S	.	.	G	K	I	E	E	G	W	N	A	D	L	V	V	I	D	L	D	L	P	E	M	F	P	V	Q	N	I	K	N	H
Template Known Secondary structure		T	T	T	S																	T	T		T	T	S	S										T								T		S		.	.	S	S			T	T	S	B										S	G	G	G		S	G	G	G
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	D	K	L	F	V	M	M	T	L	G	D	D	R	S	I	Y	R	T	Y	V	D	G	R	L	V	Y	E	R
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		L	V	H	.	.	.	.	.	.	.	.	.	A	F	S	G	E	V	F	A	T	M	V	A	G	K	W	I	Y	F	D
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	T			S			S					T	T						T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		360	.	.										.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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