Job Description P60752 Confidence 100.00% Date Thu Jan 5 12:07:07 GMT 2012 Rank 3 Aligned Residues 555 % Identity 33% Template c2yl4A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 Resolution 2.85 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		W	Q	T	F	R	R	L	W	P	T	I	A	P	F	K	A	G	L	I	V	A	G	V	A	L	I	L	N	A	A	S	D	T	F	M	L	S	L	L	K	P	L	L	D	D	G	F	G	K	T	D	.	.	.	R	S	V	L	V	W	M	P	L	V	V	I	G	L	M	I	L	R	G	I	T	S	Y	V	S	S
Query Conservation																																																					.	.	.
Alig confidence																																																					.	.	.
Template Conservation
Template Sequence		L	P	E	A	R	K	L	L	G	L	A	Y	P	E	R	R	R	L	A	A	A	V	G	F	L	T	M	S	S	V	I	S	M	S	A	P	F	F	L	G	K	I	I	D	V	I	Y	T	N	P	T	V	D	Y	S	D	N	L	T	R	L	C	L	G	L	S	A	V	F	L	C	G	A	A	A	N	A	I	R	V
Template Known Secondary structure													G	G	G																			T	T																T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	I	S	W	V	S	G	K	V	V	M	T	M	R	R	R	L	F	G	H	M	M	G	M	P	V	S	F	F	D	K	Q	S	T	G	T	L	L	S	R	I	T	Y	D	S	E	Q	V	A	S	S	S	S	G	A	L	I	T	V	V	R	E	G	A	S	I	I	G	L	F	I	M	M	F	Y	Y	S	W	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	M	Q	T	S	G	Q	R	I	V	N	R	L	R	T	S	L	F	S	S	I	L	R	Q	E	V	A	F	F	D	K	T	R	T	G	E	L	I	N	R	L	S	S	D	T	A	L	L	G	R	S	V	T	E	N	L	S	D	G	L	R	A	G	A	Q	A	S	V	G	I	S	M	M	F	F	V	S	P	N
Template Known Secondary structure																										S								S																				T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	I	I	L	I	V	L	A	P	I	V	S	I	A	I	R	V	V	S	K	R	F	R	N	I	S	K	N	M	Q	N	T	M	G	Q	V	T	T	S	A	E	Q	M	L	K	G	H	K	E	V	L	I	F	G	G	Q	E	V	E	T	K	R	F	D	K	V	S	N	R	M	R	L	Q	G	M	K	M	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	T	F	V	L	S	V	V	P	P	V	S	I	I	A	V	I	Y	G	R	Y	L	R	K	L	T	K	V	T	Q	D	S	L	A	Q	A	T	Q	L	A	E	E	R	I	G	N	V	R	T	V	R	A	F	G	K	E	M	T	E	I	E	K	Y	A	S	K	V	D	H	V	M	Q	L	A	R	K	E	A	F
Template Known Secondary structure																																																T							T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	S	I	S	D	P	I	I	Q	L	I	A	S	L	A	L	A	F	V	L	Y	A	A	S	F	P	S	V	M	D	S	L	T	A	G	T	I	T	V	V	F	S	S	M	I	A	L	M	R	P	L	K	S	L	T	N	V	N	A	Q	F	Q	R	G	M	A	A	C	Q	T	L	F	T	I	L	D	S	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	A	G	F	F	G	A	T	G	L	S	G	N	L	I	V	L	S	V	L	Y	K	G	G	L	L	M	G	S	A	H	M	T	V	G	E	L	S	S	F	L	M	Y	A	F	W	V	G	I	S	I	G	G	L	S	S	F	Y	S	E	L	M	K	G	L	G	A	G	G	R	L	W	E	L	L	E	R	E	P
Template Known Secondary structure																															T	T	S																																													T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		327				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure			.	.	.																										.
Query SS confidence			.	.	.																										.
Query Sequence		E	.	.	.	K	D	E	G	K	R	V	I	E	R	A	T	G	D	V	E	F	R	N	V	T	F	T	Y	P	.	G	R	D	V	P	A	L	R	N	I	N	L	K	I	P	A	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	D	E	G	E	I	L	M
Query Conservation			.	.	.																										.
Alig confidence			.	.	.																										.
Template Conservation
Template Sequence		K	L	P	F	N	E	G	V	I	L	N	E	K	S	F	Q	G	A	L	E	F	K	N	V	H	F	A	Y	P	A	R	P	E	V	P	I	F	Q	D	F	S	L	S	I	P	S	G	S	V	T	A	L	V	G	P	S	G	S	G	K	S	T	V	L	S	L	L	L	R	L	Y	D	P	A	S	G	T	I	S	L
Template Known Secondary structure		S	S		S	S		S	B				T	T	T															S	S		T	T	S												T	T									T	T	S	S	S	T							T	T	S	S			S
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.			.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		D	G	H	D	L	R	E	Y	T	L	A	S	L	R	N	Q	V	A	L	V	S	Q	N	V	H	L	F	N	D	T	V	A	N	N	I	A	Y	A	R	T	.	.	E	Q	Y	S	R	E	Q	I	E	E	A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N	G	V	L
Query Conservation																																										.	.
Alig confidence																																										.	.
Template Conservation
Template Sequence		D	G	H	D	I	R	Q	L	N	P	V	W	L	R	S	K	I	G	T	V	S	Q	E	P	I	L	F	S	C	S	I	A	E	N	I	A	Y	G	A	D	D	P	S	S	V	T	A	E	E	I	Q	R	V	A	E	V	A	N	A	V	A	F	I	R	N	F	P	Q	G	F	N	T	V	V	G	E	K	G	V	L
Template Known Secondary structure		T	T			T	T	T	B								S						S	S					S	S	B							T	T	S	S	S	T	T	T	S												T	T							T	S	S	S	G	G	G		B		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	N	R	T	S	L	V	I	A	H	R	L	S	T	I	E	K	A	D	E	I	V	V	V	E	D	G	V	I	V	E	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	L	K	N	P	K	I	L	L	L	D	E	A	T	S	A	L	D	A	E	N	E	Y	L	V	Q	E	A	L	D	R	L	M	D	G	R	T	V	L	V	I	A	H	R	L	S	T	I	K	N	A	N	M	V	A	V	L	D	Q	G	K	I	T	E	Y	G
Template Known Secondary structure																					S									S	S																		T	T	S															S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
		561	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	H	E	E
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		714	.	.	.