Job Description P60752 Confidence 98.10% Date Thu Jan 5 12:07:07 GMT 2012 Rank 89 Aligned Residues 194 % Identity 17% Template c1ewqA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution Resolution 2.20 Å

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		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		L	M	R	P	L	K	S	L	T	N	V	N	A	Q	F	Q	R	G	M	A	A	C	Q	T	L	F	T	I	L	D	S	E	Q	E	K	D	E	G	K	R	V	I	E	R	A	T	G	D	V	E	F	R	N	V	T	F	T	Y	P	.	G	R	D	V	P	A	L	R	N	I	N	L	K	I	P	A	G	K	T	V
Query Conservation																																																													.
Alig confidence																																																													.														.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		F	L	E	V	R	E	R	A	K	R	Q	A	E	A	L	R	E	A	A	R	I	L	A	E	L	D	V	Y	A	A	L	A	E	V	A	V	R	Y	G	Y	V	R	P	R	F	G	D	R	L	Q	I	R	A	G	R	H	P	V	V	E	R	R	T	E	F	V	P	N	D	L	E	X	A	.	.	.	H	E	L	V
Template Known Secondary structure											T	T																												T		B					S	S	S									T	T	G	G	G	T	S										S	.	.	.	S
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.				.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	D	E	G	E	I	L	M	D	G	H	D	L	R	E	Y	T	L	A	S	L	R	N	Q	V	A	L	V	S	Q	N	V	H	L	F	N	D	T	V	A	N	N	I	A	Y	A	R	T	E	Q	Y	S	R	E	Q	I	E	E
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		L	I	T	G	P	N	X	A	G	K	S	T	F	L	R	Q	T	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	L	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	S	F	V	P	A	E	E	A	H	L	.	.
Template Known Secondary structure					S		S	S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			B	S	S	S					.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.																												.	600	.	.	.	.															.	.	.	.	.	610	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.			.	.	530
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N	G	V	L	L	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	.	.	K	N	R
Query Conservation																																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																				.																																												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	P	L	F	D	G	I	Y	T	R	I	G	A	G	K	S	T	F	X	V	.	E	X	E	E	V	A	L	I	L	K	E	A	T	E	N	S	L	V	L	L	D	E	V	G	R	G	T	S	S	L	D	G	V	A	I	A	T	A	V	A	E	A	L	H	E	R	R	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.				S											S					.														T	T							S	T	T	T	T	S																				T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
														617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.		.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	L	V	I	A	H	R	L	S	T	I	E	K	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	L	F	A	T	H	Y	F	E	L	T	A	L	G	L
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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