Job Description P76561 Confidence 99.63% Date Thu Jan 5 12:24:39 GMT 2012 Rank 109 Aligned Residues 185 % Identity 16% Template c2qmqA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution Resolution 1.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		H	F	V	V	Q	S	P	D	K	P	A	Q	Q	L	L	L	L	F	H	G	V	G	D	N	P	V	A	M	.	.	.	.	.	.	G	E	I	G	N	W	F	A	P	L	F	P	D	A	L	V	V	S	V	G	G	A	E	P	S	G	N	P	A	G	R	Q	W	F	S	V	Q	G	I	T	E	D	N	R	Q	A
Query Conservation																														.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.											.																											.	.	.	.	.	.	.	.	.
Template Conservation																																														.																											.	.	.	.	.	.	.	.	.
Template Sequence		T	F	T	V	Y	G	T	P	K	P	K	R	P	A	I	F	T	Y	H	D	V	G	L	N	Y	K	S	C	F	Q	P	L	F	R	F	G	D	M	Q	E	I	I	Q	N	.	F	V	R	V	H	V	D	A	P	G	M	E	E	G	A	P	V	F	P	L	G	Y	Q	Y	P	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S				T	T										T	T												T	S								T	T	.	S								T	T	T	S	T	T						T	T						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	D	A	I	M	P	T	F	I	E	T	V	R	Y	W	Q	K	Q	S	G	V	G	A	N	A	T	A	L	I	G	F	S	Q	G	A	I	M	V	L	E	S	I	K	A	E	P	G	L	A	S	R	V	I	A	F	N	G	R	Y	A	S	L	P	E	T	A	S	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																		.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																		.	.
Template Sequence		.	.	.	.	.	L	D	Q	L	A	D	M	I	P	C	I	L	Q	Y	L	N	F	.	.	S	T	I	I	G	V	G	V	G	A	G	A	Y	I	L	S	R	Y	A	L	N	H	P	D	T	V	E	G	L	V	L	I	N	I	D	P	N	A	K	G	W	M	D	W	A	A	H	K	L	T	G	L	T	S	S	I
Template Known Secondary structure		.	.	.	.	.							T									T		.	.									T														G	G	G								S																			T	T	S
Template Predicted Secondary structure		.	.	.	.	.																		.	.
Template SS confidence
							121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
																																																													147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	T	T	I	H	L	I	H	G	G	E	D	P	V	I	D	L	A	H	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	M	I	L	G	H	L	F	S	Q	E	E	L	S	G	N	S	E	L	I	Q	K	Y	R	G	I	I	Q	H	A	P	N	L	E	N	I	E	L	Y	W	N	S	Y	N	N	R	R	D	L	N	F	E	R	G	G	E	T	T	L	K	C	P	V	M	L	V	V	G	D	Q	A	P	H	E	D	A	V	V	E
Template Known Secondary structure										S							T	T													T		T	T													T						S			T	T						S								T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	A	Q	E	A	L	I	S	A	G	G	D	V	T	L	D	I	V	E	D	L	G	H	A	I	D	N	R	S	M	Q	F	A	L	D	H	L	R	Y	T	I	P
Query Conservation
Alig confidence					.	.	.	.
Template Conservation					.	.	.	.
Template Sequence		C	N	S	.	.	.	.	K	L	D	P	T	Q	T	S	F	L	K	M	A	D	S	G	G	Q	P	Q	L	T	Q	P	G	K	L	T	E	A	F	K	Y	F	L	Q
Template Known Secondary structure					.	.	.	.		S		G	G	G							T	T		T	T
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		274	.	.					.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions