Job Description P76561 Confidence 99.51% Date Thu Jan 5 12:24:39 GMT 2012 Rank 155 Aligned Residues 174 % Identity 16% Template c1wprA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:sigma factor sigb regulation protein rsbq; PDBTitle: crystal structure of rsbq inhibited by pmsf Resolution 2.60 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	A	Q	Q	L	L	L	L	F	H	G	V	G	D	N	P	V	A	M	G	E	I	G	N	W	F	A	P	L	F	P	D	A	L	V	V	S	V	G	G	A	E	P	S	G	N	P	A	G	R	Q	W	F	S	V	Q	G	I	T	E	D	N	R	Q	A	R	V	D	A	I	M	P	T	F	I	E	T	V	R
Query Conservation
Alig confidence																															.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	G	K	A	S	I	M	F	A	P	G	F	G	C	D	Q	S	V	W	N	A	V	A	P	A	F	E	E	.	D	H	R	V	I	L	F	D	Y	V	G	S	G	H	S	D	L	Y	D	L	N	R	Y	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	G	Y	A	Q	D
Template Known Secondary structure					S	S								T	T			G	G	G	G	T	T	T	G	G	G	G	T	T	.	T	S								T	T	T	S	S	S					T	G	G	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																			.	70	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	W	Q	K	Q	S	G	V	G	A	N	A	T	A	L	I	G	F	S	Q	G	A	I	M	V	L	E	S	I	K	A	E	P	G	L	A	S	R	V	I	A	F	N	G	R	Y	A	S	L	P	E	T	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	D	V	C	E	A	L	D	L	K	E	T	V	F	V	G	H	S	V	G	A	L	I	G	M	L	A	S	I	R	R	P	E	L	F	S	H	L	V	M	V	G	P	S	P	C	Y	L	N	D	P	P	E	Y	Y	G	G	F	E	E	E	Q	L	L	G	L	L	E	M	M	E	K	N	Y	I	G	W	A	T
Template Known Secondary structure									T	T		S								T														G	G	G								S			S	B		B			T	T	T				S	B															T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
																																																			147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	T	T	I	H	L	I	H	G	G	E	D	P	V	I	D	L	A	H	A	V	A	A	Q	E	A	L	I	S	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																																																																																	.
Template Sequence		V	F	A	A	T	V	L	N	Q	P	D	R	P	E	I	K	E	E	L	E	S	R	F	C	S	T	D	P	V	I	A	R	Q	F	A	K	A	A	F	F	S	D	H	R	E	D	L	S	K	V	T	V	P	S	L	I	L	Q	C	A	D	D	I	I	A	P	A	T	V	G	K	Y	M	H	Q	H	L	P	Y	.
Template Known Secondary structure											T	T														T	S														T		B						T	T			S									S		S	S	S												S	S	S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		G	G	D	V	T	L	D	I	V	E	D	L	G	H	A	I	.	.	.	.	D	N	R	S	M	Q	F	A	L	D	H	L	R	Y	T	I
Query Conservation																		.	.	.	.
Alig confidence		.	.	.														.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	S	L	K	Q	M	E	A	R	G	H	C	P	H	M	S	H	P	D	E	T	I	Q	L	I	G	D	Y	L	K	A	H	V
Template Known Secondary structure		.	.	.										S	S																					T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions