Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Y	S	V	Q	K	S	R	L	A	K	V	A	G	V	S	L	V	L	L	L	A	A	C	S	S	D	S	R	Y	K	R	Q	V	S	G	D	E	A	Y	L	E	A	A	P	L	A	E	L	H	A	P	A	G	M	I	L	P	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?														?			?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	S	G	D	Y	A	I	P	V	T	N	G	S	G	A	V	G	K	A	L	D	I	R	P	P	A	Q	P	L	A	L	V	S	G	A	R	T	Q	F	T	G	D	T	A	S	L	L	V	E	N	G	R	G	N	T	L	W	P	Q	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	S	V	L	Q	A	K	N	Y	T	I	T	Q	R	D	D	A	G	Q	T	L	T	T	D	W	V	Q	W	N	R	L	D	E	D	E	Q	Y	R	G	R	Y	Q	I	S	V	K	P	Q	G	Y	Q	Q	A	V	T	V	K	L	L	N
Secondary structure
SS confidence
Disorder																	?	?												?	?	?	?	?	?	?	?	?									?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	E	Q	A	G	K	P	V	A	D	A	A	S	M	Q	R	Y	S	T	E	M	M	N	V	I	S	A	G	L	D	K	S	A	T	D	A	A	N	A	A	Q	N	R	A	S	T	T	M	D	V	Q	S	A	A	D	D	T	G	L	P
Secondary structure
SS confidence
Disorder		?		?	?	?	?	?	?	?		?	?		?	?																	?										?	?	?	?	?	?	?	?	?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	L	V	V	R	G	P	F	N	V	V	W	Q	R	L	P	A	A	L	E	K	V	G	M	K	V	T	D	S	T	R	S	Q	G	N	M	A	V	T	Y	K	P	L	S	D	S	D	W	Q	E	L	G	A	S	D	P	G	L	A	S
Secondary structure
SS confidence
Disorder																																												?	?	?	?					?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Sequence		G	D	Y	K	L	Q	V	G	D	L	D	N	R	S	S	L	Q	F	I	D	P	K	G	H	T	L	T	Q	S	Q	N	D	A	L	V	A	V	F	Q	A	A	F	S	K
Secondary structure
SS confidence
Disorder		?	?								?	?										?	?	?	?	?	?	?																?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3tgo chain D Region: 28 - 217 Aligned: 186 Modelled: 188 Confidence: 100.0% Identity: 99% PDB header:membrane protein Chain: D: PDB Molecule:lipoprotein 34; PDBTitle: crystal structure of the e. coli bamcd complex Phyre2 PDB 2yh5 chain A Region: 226 - 344 Aligned: 119 Modelled: 119 Confidence: 100.0% Identity: 100% PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc Phyre2 PDB 2laf chain A Region: 101 - 212 Aligned: 112 Modelled: 112 Confidence: 99.9% Identity: 100% PDB header:membrane protein Chain: A: PDB Molecule:lipoprotein 34; PDBTitle: nmr solution structure of the n-terminal domain of the e. coli2 lipoprotein bamc Phyre2 PDB 2yh6 chain C Region: 101 - 211 Aligned: 109 Modelled: 111 Confidence: 99.7% Identity: 100% PDB header:lipid binding protein Chain: C: PDB Molecule:lipoprotein 34; PDBTitle: structure of the n-terminal domain of bamc from e. coli Phyre2 PDB 1wi6 chain A domain 1 Region: 241 - 285 Aligned: 45 Modelled: 45 Confidence: 62.2% Identity: 20% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Canonical RBD Phyre2 PDB 2d7n chain A domain 1 Region: 269 - 313 Aligned: 45 Modelled: 45 Confidence: 50.3% Identity: 16% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 2e9i chain A domain 1 Region: 269 - 313 Aligned: 45 Modelled: 45 Confidence: 46.2% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 1qfh chain A domain 1 Region: 269 - 309 Aligned: 41 Modelled: 41 Confidence: 44.6% Identity: 7% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 3kdi chain A Region: 104 - 123 Aligned: 20 Modelled: 20 Confidence: 40.0% Identity: 20% PDB header:hormone receptor Chain: A: PDB Molecule:putative uncharacterized protein at2g26040; PDBTitle: structure of (+)-aba bound pyl2 Phyre2 PDB 2d7m chain A domain 1 Region: 264 - 314 Aligned: 51 Modelled: 51 Confidence: 38.1% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 1wg4 chain A Region: 235 - 285 Aligned: 51 Modelled: 51 Confidence: 37.7% Identity: 22% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Canonical RBD Phyre2 PDB 3oqu chain B Region: 110 - 123 Aligned: 14 Modelled: 14 Confidence: 31.8% Identity: 14% PDB header:hormone receptor Chain: B: PDB Molecule:abscisic acid receptor pyl9; PDBTitle: crystal structure of native abscisic acid receptor pyl9 with aba Phyre2 PDB 3k90 chain C Region: 110 - 123 Aligned: 14 Modelled: 14 Confidence: 30.5% Identity: 14% PDB header:hormone receptor, hydrolase regulator Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: the abscisic acid receptor pyr1 in complex with abscisic acid Phyre2 PDB 3p51 chain A Region: 104 - 123 Aligned: 19 Modelled: 20 Confidence: 30.3% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: three-dimensional structure of protein q2y8n9_nitmu from nitrosospira2 multiformis, northeast structural genomics consortium target nmr118 Phyre2 PDB 3klx chain B Region: 110 - 123 Aligned: 14 Modelled: 14 Confidence: 30.2% Identity: 14% PDB header:hormone receptor Chain: B: PDB Molecule:f3n23.20 protein; PDBTitle: crystal structure of native abscisic acid receptor pyl3 Phyre2 PDB 2di8 chain A domain 1 Region: 263 - 312 Aligned: 50 Modelled: 50 Confidence: 28.4% Identity: 10% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 2dib chain A domain 1 Region: 269 - 309 Aligned: 41 Modelled: 41 Confidence: 28.4% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 1wg1 chain A Region: 235 - 285 Aligned: 51 Modelled: 51 Confidence: 26.7% Identity: 18% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Canonical RBD Phyre2 PDB 1ksr chain A Region: 263 - 307 Aligned: 45 Modelled: 45 Confidence: 26.3% Identity: 13% PDB header:actin binding protein Chain: A: PDB Molecule:gelation factor; PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures Phyre2 PDB 3isw chain A Region: 263 - 309 Aligned: 47 Modelled: 47 Confidence: 24.7% Identity: 13% PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr Phyre2 1 c3tgoD_ 2 c2yh5A_ 3 c2lafA_ 4 c2yh6C_ 5 d1wi6a1 6 d2d7na1 7 d2e9ia1 8 d1qfha1 9 c3kdiA_ 10 d2d7ma1 11 d1wg4a_ 12 c3oquB_ 13 c3k90C_ 14 c3p51A_ 15 c3klxB_ 16 d2di8a1 17 d2diba1 18 d1wg1a_ 19 c1ksrA_ 20 c3iswA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3tgoD_ 100.0 99 PDB header:membrane protein Chain: D: PDB Molecule:lipoprotein 34; PDBTitle: crystal structure of the e. coli bamcd complex 2 c2yh5A_ 100.0 100 PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc 3 c2lafA_ 99.9 100 PDB header:membrane protein Chain: A: PDB Molecule:lipoprotein 34; PDBTitle: nmr solution structure of the n-terminal domain of the e. coli2 lipoprotein bamc 4 c2yh6C_ 99.7 100 PDB header:lipid binding protein Chain: C: PDB Molecule:lipoprotein 34; PDBTitle: structure of the n-terminal domain of bamc from e. coli 5 d1wi6a1 62.2 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 6 d2d7na1 50.3 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 7 d2e9ia1 46.2 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 8 d1qfha1 44.6 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 9 c3kdiA_ 40.0 20 PDB header:hormone receptor Chain: A: PDB Molecule:putative uncharacterized protein at2g26040; PDBTitle: structure of (+)-aba bound pyl2 10 d2d7ma1 38.1 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 11 d1wg4a_ 37.7 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 12 c3oquB_ 31.8 14 PDB header:hormone receptor Chain: B: PDB Molecule:abscisic acid receptor pyl9; PDBTitle: crystal structure of native abscisic acid receptor pyl9 with aba 13 c3k90C_ 30.5 14 PDB header:hormone receptor, hydrolase regulator Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: the abscisic acid receptor pyr1 in complex with abscisic acid 14 c3p51A_ 30.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: three-dimensional structure of protein q2y8n9_nitmu from nitrosospira2 multiformis, northeast structural genomics consortium target nmr118 15 c3klxB_ 30.2 14 PDB header:hormone receptor Chain: B: PDB Molecule:f3n23.20 protein; PDBTitle: crystal structure of native abscisic acid receptor pyl3 16 d2di8a1 28.4 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 17 d2diba1 28.4 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 18 d1wg1a_ 26.7 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 19 c1ksrA_ 26.3 13 PDB header:actin binding protein Chain: A: PDB Molecule:gelation factor; PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures 20 c3iswA_ 24.7 13 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr 21 c2brqB_ not modelled 24.5 13 PDB header:structural protein Chain: B: PDB Molecule:filamin a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide 22 d2d7oa1 not modelled 24.5 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 23 d2di9a1 not modelled 23.5 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 24 c3e8vA_ not modelled 22.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible transglutaminase-family protein; PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis 25 c3qtjA_ not modelled 22.2 25 PDB header:hormone receptor Chain: A: PDB Molecule:abscisic acid receptor pyl10; PDBTitle: crystal strcuture of aba receptor pyl10 (apo) 26 c2le1A_ not modelled 20.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of tfu_2981 from thermobifida fusca, northeast2 structural genomics consortium target tfr85a 27 c2pxgA_ not modelled 20.6 17 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein; PDBTitle: nmr solution structure of omla 28 d1r89a3 not modelled 20.4 19 Fold:Ferredoxin-like Superfamily:PAP/Archaeal CCA-adding enzyme, C-terminal domain Family:Archaeal tRNA CCA-adding enzyme 29 c2di7A_ not modelled 20.1 22 PDB header:structural protein Chain: A: PDB Molecule:bk158_1; PDBTitle: solution structure of the filamin domain from human bk158_12 protein 30 d2dmba1 not modelled 20.0 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 31 c2ds4A_ not modelled 19.7 9 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 32 d2d7pa1 not modelled 19.4 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 33 c3hz7A_ not modelled 19.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 34 d2cpda1 not modelled 18.1 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 35 c2k9uA_ not modelled 17.7 15 PDB header:structural protein Chain: A: PDB Molecule:gamma filamin; PDBTitle: solution nmr structure of the filamin-migfilin complex 36 c2e44A_ not modelled 17.7 15 PDB header:rna binding protein Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3 37 d1uv7a_ not modelled 17.5 10 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 38 c1uv7A_ not modelled 17.5 10 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 39 d3cnwa1 not modelled 17.5 12 Fold:TBP-like Superfamily:Bet v1-like Family:Atu1531-like 40 d1wlha1 not modelled 16.4 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 41 c2k7qA_ not modelled 16.3 14 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 18-19 42 d2dj4a1 not modelled 16.3 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 43 c2db8A_ not modelled 16.3 13 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 9, isoform 2; PDBTitle: solution structures of the fn3 domain of human tripartite2 motif protein 9 44 d2w0pa1 not modelled 16.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 45 c2f7lA_ not modelled 16.0 13 PDB header:isomerase Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase; PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase 46 c3c04A_ not modelled 15.8 13 PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa 47 c3begB_ not modelled 15.8 20 PDB header:transferase/splicing Chain: B: PDB Molecule:splicing factor, arginine/serine-rich 1; PDBTitle: crystal structure of sr protein kinase 1 complexed to its substrate2 asf/sf2 48 c2npbA_ not modelled 15.4 28 PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw 49 d2g7ja1 not modelled 14.7 33 Fold:Secretion chaperone-like Superfamily:YgaC/TfoX-N like Family:YgaC-like 50 d1je3a_ not modelled 13.7 16 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 51 d2rera1 not modelled 12.8 18 Fold:TBP-like Superfamily:Bet v1-like Family:oligoketide cyclase/dehydrase-like 52 d1axib2 not modelled 12.6 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 53 c2jxfA_ not modelled 12.5 9 PDB header:viral protein, membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: the solution structure of hcv ns4b(40-69) 54 c3pdkB_ not modelled 12.3 11 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis 55 d1v05a_ not modelled 12.1 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 56 c2ee6A_ not modelled 12.1 15 PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 21th filamin domain from human2 filamin-b 57 d2dica1 not modelled 11.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 58 c1qfhB_ not modelled 11.5 8 PDB header:actin binding protein Chain: B: PDB Molecule:protein (gelation factor); PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6 59 d2d4ra1 not modelled 11.3 5 Fold:TBP-like Superfamily:Bet v1-like Family:oligoketide cyclase/dehydrase-like 60 c2iyjA_ not modelled 11.3 25 PDB header:isomerase Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc; PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc 61 d1x4xa1 not modelled 11.2 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 62 d1v5ja_ not modelled 10.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 63 d1iarb2 not modelled 10.2 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 64 c3rghA_ not modelled 9.9 23 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens 65 d2diaa1 not modelled 9.9 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 66 d2uubk1 not modelled 9.9 16 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 67 d1qfha2 not modelled 9.8 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 68 c3iswB_ not modelled 9.8 13 PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr 69 c2w0pB_ not modelled 9.8 13 PDB header:cell adhesion Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide 70 c2brqA_ not modelled 9.8 13 PDB header:structural protein Chain: A: PDB Molecule:filamin a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide 71 c1n26A_ not modelled 9.8 14 PDB header:cytokine Chain: A: PDB Molecule:il-6 receptor alpha chain; PDBTitle: crystal structure of the extra-cellular domains of human interleukin-62 receptor alpha chain 72 d2dmca1 not modelled 9.7 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 73 d2b79a1 not modelled 9.7 24 Fold:TBP-like Superfamily:Bet v1-like Family:Smu440-like 74 c3cnkB_ not modelled 9.6 9 PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the dimerization domain of human2 filamin a 75 d1hn0a3 not modelled 9.5 15 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 76 d1q38a_ not modelled 9.1 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 77 d1t1ea2 not modelled 9.0 16 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 78 d1q9ua_ not modelled 9.0 27 Fold:TBP-like Superfamily:TT1751-like Family:TT1751-like 79 c3tfzB_ not modelled 9.0 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:cyclase; PDBTitle: crystal structure of zhui aromatase/cyclase from streptomcyes sp.2 r1128 80 c2f3jA_ not modelled 8.9 20 PDB header:transport protein Chain: A: PDB Molecule:rna and export factor binding protein 2; PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155). 81 c2glfB_ not modelled 8.8 5 PDB header:hydrolase Chain: B: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: crystal structure of aminipeptidase (m18 family) from thermotoga2 maritima 82 d3begb1 not modelled 8.8 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 83 c1wqaB_ not modelled 8.8 21 PDB header:isomerase Chain: B: PDB Molecule:phospho-sugar mutase; PDBTitle: crystal structure of pyrococcus horikoshii2 phosphomannomutase/phosphoglucomutase complexed with mg2+ 84 d2qalk1 not modelled 8.6 20 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 85 d1fyhb1 not modelled 8.5 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 86 d3d85d3 not modelled 8.5 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 87 c2rneA_ not modelled 8.3 16 PDB header:rna binding protein Chain: A: PDB Molecule:tia1 protein; PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1 88 d2q22a1 not modelled 8.2 9 Fold:Ava3019-like Superfamily:Ava3019-like Family:Ava3019-like 89 d2bp3a1 not modelled 7.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 90 c2j3sB_ not modelled 7.9 14 PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the human filamin a ig domains 19 to2 21 91 d1i7na1 not modelled 7.8 21 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 92 d2od4a1 not modelled 7.8 20 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Marine metagenome family DABB2 93 c2dhxA_ not modelled 7.6 24 PDB header:rna binding protein Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 10 PDBTitle: solution structure of the rrm domain in the human poly (adp-2 ribose) polymerase family, member 10 variant 94 c2nqcA_ not modelled 7.4 15 PDB header:immune system Chain: A: PDB Molecule:filamin-c; PDBTitle: crystal structure of ig-like domain 23 from human filamin c 95 d2nqca1 not modelled 7.4 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 96 c2yrzA_ not modelled 7.2 19 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-4; PDBTitle: solution structure of the fibronectin type iii domain of2 human integrin beta-4 97 d1x5ia1 not modelled 7.0 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 98 d1a8ya3 not modelled 6.9 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Calsequestrin 99 d2vkwa2 not modelled 6.9 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0