Job Description P0A955 Confidence 96.92% Date Thu Jan 5 11:09:25 GMT 2012 Rank 244 Aligned Residues 189 % Identity 13% Template d1ykwa1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 2.00

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.													.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		V	K	K	L	E	H	A	V	P	M	A	K	A	L	V	A	G	G	V	R	V	L	E	V	T	L	R	T	E	C	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	A	I	R	A	I	A	K	E	V	P	E	A	I	V	G	A	G	T	V	L	N	.	.	.	.	.	P	Q	Q	L	A	E	V	T	E
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		G	L	S	P	G	E	F	A	E	I	A	Y	Q	S	W	L	G	G	L	D	I	A	K	D	D	E	M	L	A	D	V	T	W	S	S	I	E	E	R	A	A	H	L	G	K	A	R	R	K	A	E	A	E	T	G	E	P	K	I	Y	L	A	N	I	T	D	E	V	D	S	L	M	E	K	H	D	V	A	V	R
Template Known Secondary structure		S																T	T		S						T	T		S	S	B	T	T	B																					S	S												G	G	G
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.															.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Query SS confidence														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Query Sequence		A	G	A	Q	F	A	I	S	P	G	L	T	.	.	.	E	P	L	L	K	A	A	T	E	G	T	I	P	L	I	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	T	V	S	E	L	M	L	G	M	D	Y	G	L	K	E	F	K	F	F	P	A	E	A	N	G	G	.	.	.	.	.	.
Query Conservation														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Alig confidence														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	N	A	L	L	I	N	A	L	P	V	G	L	S	A	V	R	M	L	S	N	Y	T	Q	V	P	L	I	G	H	F	P	F	I	A	S	F	S	R	M	E	K	Y	G	I	H	S	K	V	M	T	K	L	Q	R	L	A	G	L	D	A	V	I	M	P	G	F	G	D	R	V	M	T	P	E	E	E	V
Template Known Secondary structure			T																								S	S							T	T	T						S	T	T	S	S														T		S							S	S	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																	.	.	.																			.		.	.
Query SS confidence																	.	.	.																			.		.	.
Query Sequence		V	K	A	L	Q	A	I	A	G	P	F	S	Q	V	R	.	.	.	F	C	P	T	G	G	I	S	P	A	N	Y	R	D	Y	L	A	L	.	K	.	.	S	V	L	C	I	G	G	S	W	L	V	P	A	D	A	L	E	A	G	D	Y	D	R	I	T	K	L	A	R	E	A	V	E	G	A
Query Conservation																	.	.	.																			.		.	.
Alig confidence																	.	.	.																			.		.	.
Template Conservation
Template Sequence		L	E	N	V	I	E	C	T	K	P	M	G	R	I	K	P	C	L	P	V	P	G	G	S	D	S	A	L	T	L	Q	T	V	Y	E	K	V	G	N	V	D	F	G	F	V	P	G	R	G	V	F	G	H	P	M	G	P	K	A	G	A	K	S	I	R	Q	A	W	E	A	I	E	Q	G	I
Template Known Secondary structure										S			T	T											S	B		T	T	T										S	S		S				B	S	S	S	S	S	S		T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions