|   |
25 | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|
|  |  |  |  |  |  |
|
|
|  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | E | H | A | V | P | M | A | K | A | L | V | A | G | G | V | R | V | L | E | V | T | L | R | T | E | C | . |
. |
. |
. |
. |
. |
. |
. |
A | V | D | A | I | R | A | I | A | K | E | V | P | . |
. |
. |
E | A | I | V | G | A | G | T | V | L | N | P | Q | . |
. |
. |
Q | L | A | E | V | T | E | A | G | A | Q | F |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|
|
|   |   |   |
|
|
|   |   |
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |
|   |   |   |   |   | . | . | . |   |   |   |
|
|   |   |   |
|   |   |   |
| . | . | . |   |   |   |   |
|   |   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
|   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |
Template Sequence |   |
D | F | A | K | T | T | K | L | V | N | Y | L | I | D | N | G | T | T | A | I | V | V | G | G | T | T | G | E | S | P | T | L | T | S | E | E | K | V | A | L | Y | R | H | V | V | S | V | V | D | K | R | V | P | V | I | A | G | T | G | S | N | N | T | H | A | S | I | D | L | T | K | K | A | T | E | V | G | V | D | A |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | S | T | T | T | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
  |
  |   |
91 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
|
|
. | . | 110 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
Predicted Secondary structure |   |
 |
|
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  | . | . | . | . | . | . | . |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | I | S | . |
. |
. |
. |
. |
. |
P | G | L | T | E | P | L | L | K | A | A | T | E | G | . |
. |
. |
. |
T | I | P | L | I | P | . |
. |
. |
. |
. |
. |
. |
G | I | S | T | V | S | E | L | M | L | G | M | D | Y | G | L | K | E | F | K | F | F | P | A | E | A | N | G | G | V | K | A | L | Q | A | I | A | G | P | F |
Query Conservation |   |
|   |   | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . | . |
|   |   |   |   |   | . | . | . | . | . | . | . |
|
|   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
Alig confidence |   |
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|
| . | . |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | M | L | V | A | P | Y | Y | N | K | P | S | Q | E | G | M | Y | Q | H | F | K | A | I | A | E | S | T | P | L | P | V | M | L | Y | N | V | P | G | R | S | I | V | Q | I | S | V | D | T | V | V | R | L | S | E | I | E | N | I | V | A | I | K | . |
. |
D | A | G | G | D | V | L | T | M | T | E | I | I | E | K | T |
Template Known Secondary structure |   |
 |  |  |  |
|
|
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S |
|  |  |  |  |  |
|  |  |  |  | S | S |
|
|
|  |  |  |  |  |  |  |  | T | S | T | T |  |  |  |  |  | . | . |  |
| S | S |
|  |  |  |  |  |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
|
. | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . |
  |
  |   |
154 | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  | . | . | . | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Q | V | R | F | C | P | T | G | G | I | S | P | A | N | Y | R | D | Y | L | A | L | K | S | V | L | C | I | G | G | S | W | L | V | P | A | D | . |
. |
. |
. |
. |
. |
. |
A | L | E | A | G | D | Y | D | R | I | T | K | L | A | R | E | A | V | E | G | A | K |
Query Conservation |   |
  |   |
|
|
|   |   |   |
|
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|   |   |
|   |
|
|
|   |
|   |   |   |   | . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |
| . | . |   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |
Template Sequence |   |
A | D | D | F | A | V | Y | S | G | . |
. |
D | D | G | L | T | L | P | A | M | A | V | G | A | K | G | I | V | S | V | A | S | H | V | I | G | N | E | M | Q | E | M | I | A | A | F | Q | A | G | E | F | K | K | A | Q | K | L | H | Q | L | L | V | R | V | T | D |
Template Known Secondary structure |   |
| T | T |
|  |  |  |  | S | . | . | S | G | G | G |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
| . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
180 | . | . | . | . | . | . | . | . | |
|
. | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . |
  |