Job Description P0A955 Confidence 98.51% Date Thu Jan 5 11:09:25 GMT 2012 Rank 149 Aligned Residues 162 % Identity 9% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																						.																													.	.	.	.
Query SS confidence																																						.																													.	.	.	.
Query Sequence		I	L	T	T	G	P	V	V	P	V	I	V	V	K	K	L	E	H	A	V	P	M	A	K	A	L	V	A	G	G	V	R	V	L	E	V	.	T	L	R	T	E	C	A	V	D	A	I	R	A	I	A	K	E	V	P	E	A	I	V	G	A	G	T	V	.	.	.	.	L	N	P	Q	Q	L	A	E	V	T	E
Query Conservation																																						.																													.	.	.	.
Alig confidence																	.	.	.	.	.	.																.																													.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		P	F	S	N	Q	S	I	I	P	A	A	H	N	Q	K	.	.	.	.	.	.	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	L	E	T	H	V	A	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	K	V	L	L	H	A	D	L	V	N	G	L	K	N	D	D	Y	A	I	D	F	L	C	T
Template Known Secondary structure		S		T	T								S	S	S		.	.	.	.	.	.						T	T	S	S								S			T	T	T											T	T							G	G	G			T				S
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
			86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																	.	.	.	.	.	.
Query SS confidence		.																																	.	.	.	.	.	.
Query Sequence		.	A	G	A	Q	F	A	I	S	P	G	L	T	E	P	L	L	K	A	A	T	E	G	T	I	P	L	I	P	G	I	S	T	.	.	.	.	.	.	V	S	E	L	M	L	G	M	D	Y	G	L	K	E	F	K	F	F	P	A	E	A	N	G	G	V	K	A	L	Q	A	I	A	G	P	F	S	Q	V	R	F
Query Conservation		.																																	.	.	.	.	.	.
Alig confidence		.								.	.																								.	.	.	.	.	.																							.	.	.												.
Template Conservation										.	.																																																				.	.	.												.
Template Sequence		E	I	C	P	D	G	I	I	.	.	S	T	R	G	N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	G	I	I	.	.	.	P	E	Q	V	Q	K	M	T	Q	K	L	.	H	I	P	V
Template Known Secondary structure		T	T			S				.	.		S											T	T											S																	S							T	T		.	.	.												.
Template Predicted Secondary structure										.	.																																																				.	.	.												.
Template SS confidence
		78	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.		.	.	150	.
		159	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		C	P	T	G	G	I	.	S	P	A	N	Y	R	D	Y	L	A	L	K	S	V	L	C	I	G	G	S
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		I	A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V	T	T	S	N
Template Known Secondary structure					S	S			S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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