Job Description P0A955 Confidence 94.09% Date Thu Jan 5 11:09:25 GMT 2012 Rank 380 Aligned Residues 187 % Identity 13% Template c3d0cB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.																					.	.													.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.																					.	.													.	.	.
Query Sequence		K	L	E	H	A	V	P	M	A	K	A	L	V	A	G	G	V	R	V	L	E	V	.	.	.	.	.	.	.	.	T	L	R	T	E	C	A	V	D	A	I	R	A	I	A	K	E	V	P	E	.	.	A	I	V	G	A	G	T	V	L	N	P	Q	.	.	.	Q	L	A	E	V	T	E	A	G	A	Q	F	A
Query Conservation																								.	.	.	.	.	.	.	.																					.	.													.	.	.
Alig confidence																								.	.	.	.	.	.	.	.																					.	.													.	.	.
Template Conservation
Template Sequence		D	W	K	G	L	D	D	N	V	E	F	L	L	Q	N	G	I	E	V	I	V	P	N	G	N	T	G	E	F	Y	A	L	T	I	E	E	A	K	Q	V	A	T	R	V	T	E	L	V	N	G	R	A	T	V	V	A	G	I	G	Y	S	V	D	T	A	I	E	L	G	K	S	A	I	D	S	G	A	D	C	V
Template Known Secondary structure																T	T						T	T	S	G	G	G	T	G	G	G	S																	T	T	S	S								S	S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		92	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.
Predicted Secondary structure				.	.	.	.	.	.															.	.	.	.							.	.	.																																										.
Query SS confidence				.	.	.	.	.	.															.	.	.	.							.	.	.																																										.
Query Sequence		I	S	.	.	.	.	.	.	P	G	L	T	E	P	L	L	K	A	A	T	E	G	.	.	.	.	T	I	P	L	I	P	.	.	.	G	I	S	T	V	S	E	L	M	L	G	M	D	Y	G	L	K	E	F	K	F	F	P	A	E	A	N	G	G	V	K	A	L	Q	A	I	A	G	P	F	S	.	Q	V	R
Query Conservation				.	.	.	.	.	.															.	.	.	.							.	.	.																																										.
Alig confidence				.	.	.	.	.	.															.	.	.	.							.	.	.																							.	.																		.
Template Conservation																																																											.	.
Template Sequence		X	I	H	Q	P	V	H	P	Y	I	T	D	A	G	A	V	E	Y	Y	R	N	I	I	E	A	L	D	A	P	S	I	I	Y	F	K	D	A	H	L	S	D	D	V	I	K	E	L	A	P	L	D	K	L	V	G	I	K	.	.	Y	A	I	N	D	I	Q	R	V	T	Q	V	X	R	A	V	P	K	S	S	N
Template Known Secondary structure									S																		S	S	S									T	T	S		T							T	T		T	T						.	.																S		G	G	G
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.
Query Sequence		F	C	P	T	G	G	I	S	P	A	N	Y	R	D	Y	L	A	L	K	S	V	L	C	I	G	G	S	W	L	V	P	A	D	.	.	.	.	.	.	.	A	L	E	A	G	D	Y	D	R	I	T	K	L	A	R	E	A	V	E	G	A	K	L
Query Conservation																																			.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	F	I	C	G	T	A	E	K	W	A	P	F	F	Y	H	A	G	A	V	G	F	T	S	G	L	V	N	V	F	P	Q	K	S	F	A	L	L	E	A	L	E	E	G	N	Q	E	K	I	W	D	V	W	E	D	V	V	P	F	E	D	L
Template Known Secondary structure							T	T												T							S	G	G	G	T															T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions