Job Description P0A955 Confidence 98.83% Date Thu Jan 5 11:09:25 GMT 2012 Rank 124 Aligned Residues 186 % Identity 18% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																		.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																					.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	T	S	A	E	S	I	L	T	T	G	P	V	V	P	V	I	V	.	.	.	.	V	K	K	L	E	H	A	V	P	M	A	K	A	L	V	A	G	G	V	R	V	L	E	V	T	L	R	T	E	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	A	I	R	A	I	A	K
Query Conservation																					.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	C	Q	S	V	T	E	L	K	A	D	F	P	D	N	I	V	I	A	S	I	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W	V	R	Q
Template Known Secondary structure														T	T	S										S															T	T		S										S	S	G	G	G	G	T		T
Template Predicted Secondary structure
Template SS confidence
		621	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
		63	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																.	.	.																																					.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.																																					.	.	.	.	.	.	.	.	.
Query Sequence		E	V	P	E	A	I	V	G	A	G	T	V	L	N	.	.	.	P	Q	Q	L	A	E	V	T	E	A	G	A	Q	F	A	I	S	P	G	L	T	E	P	L	L	K	A	A	T	E	G	T	I	P	L	I	.	.	.	.	.	.	.	.	.	P	G	I	S	T	V	S	E	L	M	L	G	M	D	Y	G	L	K
Query Conservation																.	.	.																																					.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.																																					.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		A	V	Q	I	P	F	F	A	K	L	T	P	N	V	T	D	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R	T	T	Y	G	G	V	S	G	T	A	I	R	P	I	A	L	R	.	.	.	.
Template Known Secondary structure				S	S								S		S	S													T		S														B		T	T	S		B	S	S		B	T	T	T	T	B								S	G	G	G							.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		E	F	K	F	F	P	A	E	A	N	G	G	V	K	A	L	Q	A	I	A	G	P	F	S	Q	V	R	F	C	P	T	G	G	I	.	S	P	A	N	Y	R	D	Y	L	A	L	K	S	V	L	C	I	G	G	S	W	L	V	P	A	D	A	L	E	A	G	D	Y	D	R	I	T	K	L	A	R	E	A	V	E
Query Conservation																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	Q	D	F	.	.	.	T	V	I	Q	D	Y	C	T	G	L	K	A	L	L	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	T	T							S	S			S										T	T		S					S					T	S		T	.	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.
Template SS confidence
																777	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.				.	.	.	.	.	830	.	.	.	.	.	.	.	.	.
		210
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		840

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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