Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9X1
Confidence100.00%DateThu Jan 5 11:11:37 GMT 2012
Rank58Aligned Residues191
% Identity27%Templatec3pihA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LSDVSLELKPGKILTLLGPNGAGKSTLV. RVVLGLVTPDEGVIKRNGKL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPAT
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SSSS
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   600.........610.........620.........630.........640.........650.........660.........670.........
 
   68.70....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RIGYVPQ
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Template Sequence  YTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGK
Template Known Secondary structure  SSTTSSS

GGGG
TTSTTTB
TTTTTSS

TTS


TTTTTS
B
TTGGG

BTTB
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   680.........690.........700.........710.........720.........730.........740.........750.........
 
   75....80.........90.........100.........110.........120.........130.........140 .........150.
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Query Sequence  KLYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQ. . . LLVLDEPTQGV
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Template Sequence  NISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGL
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SSBTTT
TTGGGSBTT

STT

TS


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   760.........770.........780.........790.........800.........810.........820.........830.........
 
   152.......160.........170.........180.........190.... . ....200.........210..
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Query Sequence  DVNGQVALYDLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCL. . . . . . N. HHICCSGTPEVVSLHPE
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Template Sequence  HFEDVRKLVEVLHRLVDR. GNTVIVIEHNLDVIKN. ADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH
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T.T



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SSSSGGG

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   840.........850....... ..860.........870... ......880.........890.........900.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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