|   |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
. | . | . | . | 50 | |
|
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  | . |  |  |  |  |  | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | K | P | G | K | I | L | T | L | L | G | P | N | G | A | G | K | S | T | . |
L | V | R | V | V | . |
. |
L | G | L | V | T | P | D | E | G | V | I | K | R | N | G | K | L | R | I | G | Y | V | P | Q | K | L | Y | L | D | T | T | L | P | L | T | V | N | R | F | L | R | L | R | P | G | T | H | K | E | D | I | L | P |
Query Conservation |   |
|   |   |
|
|   |   |   |
|
|
|   |
|
|
|
|
|
|
| . |
|
|
|   |
| . | . |   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|   |   |   |   |   |
|
|
|   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |
|   |
|
|   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |   | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
Y | Q | N | N | Q | I | M | V | F | V | G | E | T | G | S | G | K | T | T | Q | I | P | Q | F | V | L | F | D | E | M | P | H | L | E | N | T | Q | V | A | C | T | Q | P | R | R | V | A | A | M | S | V | A | Q | R | V | A | E | E | M | D | V | K | L | G | E | E | V | G | Y | S | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |
| S |  |  |  |  |  |
|
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
| G | G | G | G | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| B | T | T | T |  |  |  |  |  | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
  |
  |   |
104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | K | R | V | Q | A | G | H | L | I | N | A | P | M | Q | K | L | S | G | G | E | T | Q | R | V | L | L | A | R | A | L | L | N | R | P | Q | L | L | V | L | D | E | P | . |
T | Q | G | V | D | V | N | G | Q | V | A | L | Y | D | L | I | D | Q | L | R | R | E | L | D | C | G | V | L | M | V | S | H | D | L | H |
Query Conservation |   |
  |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|
|   |
|
|   |
|
|   |   |   |
|   |
|
|
|
|
|
|
| . |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|
|   |
|
|
|   |   |   |
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|   |
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |   |
Template Sequence |   |
. |
. |
. |
R | F | E | N | K | T | S | N | K | T | I | L | K | Y | M | T | D | G | M | L | L | R | E | A | M | E | D | H | D | L | S | R | Y | S | C | I | I | L | D | E | A | H | E | R | T | L | A | T | D | I | L | M | G | L | L | K | Q | V | V | K | R | R | P | D | L | K | I | I | I | M | S | A | T | L | D | A | E |
Template Known Secondary structure |   |
. | . | . | T | T |  |  |  |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
| T | T |  |  |  |  |  |  |
|
| G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  | S | S | S |
|
|  |
Template Predicted Secondary structure |   |
. | . | . |
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
  |
  |   |
183 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
L | V | M | A | K | T | D |
Query Conservation |   |
  |
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
Template Sequence |   |
K | F | Q | R | Y | F | N |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
254 | . | . | . | . | . | 260 |
  |