Job Description P0A9X1 Confidence 96.46% Date Thu Jan 5 11:11:37 GMT 2012 Rank 302 Aligned Residues 119 % Identity 14% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	T	L	L	G	P	N	G	A	G	K	S	T	L	V	R	V	V	L	G	L	V	T	P	D	E	G	V	I	K	R	N	G	K	L	R	I	G	Y	V	P	Q	K	L	Y	L	D	T	T	L	P	L	T	V	N	R	F	L	R	L	R	P	G	T	H	K	E	D	I	L	P	A	L	K	R	V	Q	A	G
Query Conservation
Alig confidence																																		.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	.	.	.	.	.	V	C	S	D	T	W	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E
Template Known Secondary structure									T	T	S	S														T	T	T						.	.	.	.	.						S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											G	G	G	T
Template Predicted Secondary structure																																		.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.																				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		H	L	I	N	A	P	M	Q	K	L	S	G	G	E	T	Q	R	V	L	L	A	R	A	L	L	N	R	P	Q	L	L	V	L	D	E	P	T	.	Q	G	V	D	V	N	G	Q	V	A	L	Y	D	L	I	D	Q	L	R	R	E	L	D	C	G	V	L	M	V	S
Query Conservation																																							.
Alig confidence																									.	.													.																				.	.
Template Conservation																									.	.																																	.	.
Template Sequence		V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	.	.	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	.	.	P	H	E	V	I	L	V	I	D
Template Known Secondary structure						T	T																		.	.	T	T		S										S	S																		.	.		S
Template Predicted Secondary structure																									.	.																																	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions