Phyre 2 alignment of P25524 with d1k1da2

Job Description P25524
Confidence 99.59% Date Thu Jan 5 11:41:56 GMT 2012

Rank 76 Aligned Residues 297

% Identity 14% Template d1k1da2

SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases Hydantoinase (dihydropyrimidinase), catalytic domain

Resolution 3.01

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	57	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence	P	F	V	E	P	H	I	H	L	D	.	.	.	.	T	T	Q	T	A	G	Q	P	N	W	N	Q	S	G	T	L	F	E	G	I	E	R	W	A	E	R	K	A	L	L	T	H	D	D	V	K	Q	R	A	W	Q	T	L	K	W	Q	I	A	N	G	I	Q	H	V	R	T	H	V	D	V	S	D	A	T	L	T
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.
Template Conservation
Template Sequence	G	G	I	D	P	H	T	H	L	D	M	P	L	G	G	T	V	T	K	D	D	F	E	S	G	T	I	A	A	A	F	G	G	T	T	T	I	I	D	F	C	L	T	N	K	G	E	P	L	K	K	A	I	E	T	W	H	N	K	A	N	G	K	A	V	I	D	Y	G	F	H	L	M	I	S	E	I	T	D	D
Template Known Secondary structure									S	S				S	S	S			S	S												T	T												T	T	S														T	T	T		S	S									S
Template Predicted Secondary structure
Template SS confidence
	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	K	A	M	L	E	V	K	Q	E	V	A	P	W	I	D	L	Q	I	V	A	F	P	Q	E	G	I	L	S	Y	P	N	G	E	A	L	L	E	E	A	L	R	L	G	A	D	V	V	G	A	I	P	H	F	E	F	T	R	E	Y	G	V	E	S	L	H	K	T	F	A	L	A	Q	K	Y	D	R	L	I
Query Conservation
Alig confidence																			.																																	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																	.	.	.	.	.	.	.	.	.
Template Sequence	V	L	E	E	L	P	K	V	L	E	E	E	G	I	T	S	L	V	.	F	M	A	Y	K	N	V	F	Q	A	D	D	G	T	L	Y	C	T	L	L	A	A	K	E	L	G	A	L	V	M	V	H	.	.	.	.	.	.	.	.	.	A	E	N	G	D	V	I	D	Y	L	T	K	K	A	L	A	D	G	N	T
Template Known Secondary structure											S	S				B			.	B	S	S	S	T	T	T	T	B																	T		B				B	.	.	.	.	.	.	.	.	.																	T	T
Template Predicted Secondary structure																			.																																	.	.	.	.	.	.	.	.	.
Template SS confidence
	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence	D	V	H	C	D	E	I	D	D	E	Q	S	R	F	V	E	T	V	A	A	L	A	H	H	E	G	M	G	A	R	V	T	A	S	H	T	T	A	M	H	S	Y	N	G	A	Y	T	S	R	L	F	R	L	L	K	M	S	G	I	N	F	V	A	N	P	L	V	N	I	H	L	Q	G	R	F	D	T	Y	P	.
Query Conservation																																																																																.
Alig confidence																																	.	.	.	.	.																																											.
Template Conservation																																	.	.	.	.	.
Template Sequence	D	P	I	Y	H	A	L	T	R	P	P	E	L	E	G	E	A	T	G	R	A	C	Q	L	T	E	L	A	G	S	Q	L	.	.	.	.	.	Y	V	V	H	V	T	C	A	Q	A	V	E	K	I	A	E	A	R	N	K	G	L	D	V	W	G	E	T	C	P	Q	Y	L	V	L	D	Q	S	Y	L	E	K	P
Template Known Secondary structure	S	T						T	S																				T				.	.	.	.	.				S			S													T	T																G	G	G	G	T	S	S
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

															292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.														.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	R	G	I	T	R	V	K	E	M	L	E	S	G	I	N	V	C	F	G	H	D	D	V	F	D	P	W	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	G	T	A	N	M	L	Q	V	L	H	M	G	L	H	V	C	Q	L	M	G	Y
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	F	E	G	A	K	Y	V	W	S	P	P	L	R	E	K	W	H	Q	E	V	L	W	N	A	L	K	N	G	Q	L	Q	T	L	G	S	D	Q	C	S	F	D	F	K	G	Q	K	E	L	G	R	G	D	F	T	K	I	P	N	G	G	P	I	I	E	D	R	V	S	I	L	F	S	E	G	V	K	K	G	R
Template Known Secondary structure	T	T	G	G	G	G	G			S	S					T	T												T	S	S							B					T	T	T	T	G	G	G	G	S	S		G	G	G	S				B			T	T	T									T	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
	279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

	345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence	G	Q	I	N	D	G	L	N	L	I	T	H	H	S	A	R	T	L	N	L	.	.	Q	D	Y	G
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence	I	T	L	N	Q	F	V	D	I	V	S	T	R	I	A	K	L	F	G	L	F	P	K	K	G	T
Template Known Secondary structure	S										T							T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions