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Job DescriptionP25524
Confidence100.00%DateThu Jan 5 11:41:56 GMT 2012
Rank18Aligned Residues354
% Identity16%Templatec3gnhA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:l-lysine, l-arginine carboxypeptidase cc2672; PDBTitle: crystal structure of l-lysine, l-arginine carboxypeptidase cc2672 from2 caulobacter crescentus cb15 complexed with n-methyl phosphonate3 derivative of l-arginine.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10......... 20.........30.........40.........50.........60.........70.........80
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Query Sequence  LQTIINARLPGEEG. . . . . LWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSG
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Template Sequence  IKAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNS. . . .
Template Known Secondary structure  TTTTSTTTTS


TT


TT

TT

SGGG....
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   2930.........40.........50.........60.........70.........80.........90.........100....
 
   81........90.........100.........110.........120.........130......... 140..
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Query Sequence  TLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMLE. . . . . . . . . . . . . . . . . . VKQ
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Template Sequence  . . . . . . . . . . . . . LEYSDRFWSVVQTANAKKTLEAGFTTVRNVGAADYDDVGLREAIDAGYVPGPRIVTAAISFGATGGH
Template Known Secondary structure  .............GGS
TT


STTTTSS




S

BSTTST
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   105....110.........120.........130.........140.........150.........160.........170.
 
   143......150.........160.........170.........180.... .....190.........200.........210.....
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Query Sequence  EVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGAI. . . . . . . PHFEFTREYGVESLHKTFALAQKYDRLIDVH
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Template Sequence  CDSTFFPPSMDQKNPFNSDSPDEARKAVRTLKKYGAQVIICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAH
Template Known Secondary structure  TS

SS
GGG



TT


STT
SB

B
B

SSSSS

TT
B
S
TT
B
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   172.......180.........190.........200.........210.........220.........230.........240.........250.
 
   216...220.........230.........240.........250.........260.........270.........280.....
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Query Sequence  CDEIDDEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQG. . . . . . . . . .
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Template Sequence  AHGASGIREAVR. . . . . . . . . . . . . . . . . . . AGVDTIEHASLVDDEGIKLAVQKGAYFSMDIYNTDYTQAEGKKNGVLED
Template Known Secondary structure 
S...................TT
S
TT

T



STT

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   253......260.... .....270.........280.........290.........300.........310...
 
   286...290.........300.........310.........320.........330.........340.........350.........360...
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Query Sequence  . . RFDTYPKRRGITRVKEMLESGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLN
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Template Sequence  NLRKDRDIGELQRENFRKALKAGVKMVYGTD. . . . . AGIYPHGDNAKQFAVMVRY. . . . . GATPLQAIQSATLTAAEALG
Template Known Secondary structure  T




.....BTTB
TT
GGGT.....T

TTT
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   314.....320.........330.........340.... .....350.........360... ......370.........380...
 
   364.. ...370.........380.........390.........400......
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Query Sequence  LQD. . YGIAAGNSANLIILPAENGFDALRRQVPVRYSVRGGKVIA
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Template Sequence  RSKDVGQVAVGRYGDMIAVAGD. PLADVTTLEKPVFVMKGGAVVK
Template Known Secondary structure 
TTTSSS

TTSB

SS
.TTT
GGGGGS
STT
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   384.....390.........400..... ....410.........420.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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