Phyre 2 alignment of P25524 with c3f4cA

Job Description P25524
Confidence 99.08% Date Thu Jan 5 11:41:56 GMT 2012

Rank 104 Aligned Residues 279

% Identity 15% Template c3f4cA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:organophosphorus hydrolase; PDBTitle: crystal structure of organophosphorus hydrolase from geobacillus2 stearothermophilus strain 10, with glycerol bound

Resolution 2.07 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	54	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence	V	I	P	.	.	.	P	F	V	E	P	H	I	H	L	D	T	T	Q	T	A	G	Q	P	N	W	N	Q	S	G	T	L	F	E	G	I	E	R	W	A	E	R	K	A	L	L	T	H	D	D	V	K	Q	R	A	W	Q	T	L	K	W	Q	I	A	N	G	I	Q	H	V	R	T	H	V	D	V	S	D	A	T
Query Conservation				.	.	.
Alig confidence				.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Sequence	V	P	V	E	Q	L	G	K	T	L	I	H	E	H	F	L	F	G	Y	P	G	F	Q	G	D	V	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	F	R	E	D	E	A	L	R	V	A	V	E	A	A	E	K	M	K	R	H	G	I	Q	T	V	V	D	P	.	.	T	P	N	D	C
Template Known Secondary structure			G	G	G			S			S									T	T	G	G	G	G		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																				T	T	T								.	.			G	G	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template SS confidence
	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.

	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.													.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query Sequence	L	T	A	L	K	A	M	L	E	V	K	Q	E	V	A	P	W	I	D	L	Q	I	V	A	F	P	Q	E	G	I	L	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	P	N	G	E	A	L	L	E	E	A	L	R	L	G	A	D	V	V	G	A	I	.	.	.	.	.	.	P	H	F	E	F	T	R	E
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence	G	R	N	P	A	F	L	R	R	V	A	E	E	T	G	L	N	I	I	C	A	T	G	Y	Y	Y	E	G	E	G	A	P	P	Y	F	Q	F	R	R	L	L	G	T	A	E	D	D	I	Y	D	M	F	M	A	E	L	T	E	G	I	A	D	T	G	I	K	A	G	V	I	L	A	S	S	K	G	R	I	T	E
Template Known Secondary structure	T																				B						T	T	S	S		T										T																T		S	T	T	S					S	B			B		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
	173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

	193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	G	V	E	S	L	H	K	T	F	A	L	A	Q	K	Y	D	R	L	I	D	V	H	C	D	E	I	D	D	E	Q	S	R	F	V	E	T	V	A	A	L	A	H	H	E	G	M	G	A	R	V	T	A	S	H	T	T	A	M	H	S	Y	N	G	A	Y	T	S	R	L	F	R	L	L	K	M	S	G	I	N
Query Conservation
Alig confidence																														.	.	.	.																												.	.	.	.	.	.
Template Conservation																														.	.	.	.																												.	.	.	.	.	.
Template Sequence	Y	E	K	M	F	F	R	A	A	A	R	A	Q	K	E	T	G	A	V	I	I	T	H	T	Q	E	G	T	M	.	.	.	.	G	P	E	Q	A	A	Y	L	L	E	H	G	A	D	P	K	K	I	V	I	G	H	M	C	G	N	T	.	.	.	.	.	.	D	P	D	Y	H	R	K	T	L	A	Y	G	V	Y
Template Known Secondary structure																			B				B		S	T	T			.	.	.	.											T	T			G	G	G						G	G	G			.	.	.	.	.	.										T	T	T
Template Predicted Secondary structure																														.	.	.	.																												.	.	.	.	.	.
Template SS confidence
	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.							310	.	.	.	.	.	.	.	.	.	320	.	.	.

	273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.											.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																				.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence	F	V	A	N	P	L	V	N	I	H	L	Q	G	R	F	D	T	Y	P	K	R	R	G	I	T	R	V	K	E	M	L	E	S	G	I	.	.	N	V	C	F	G	H	D	D	V	F	D	P	W	Y	P	L	G	.	.	.	.	.	.	.	.	.	.	T	A	N	M	L	Q	V	L	H	M	G	L	H	V	C	Q
Query Conservation																																				.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.																													.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.
Template Sequence	I	A	F	D	.	.	.	R	F	G	I	Q	G	M	V	G	A	P	T	D	E	E	R	V	R	T	L	L	A	L	L	R	D	G	Y	E	K	Q	I	M	L	S	H	D	T	V	N	V	W	L	G	R	P	F	T	L	P	E	P	F	A	E	M	M	K	N	W	H	V	E	H	L	F	V	N	I	I	P	A	L
Template Known Secondary structure					.	.	.		T	T			S	S	S	S																	T	T		G	G	G													S	S												T	T	T		S	T	T					T
Template Predicted Secondary structure					.	.	.
Template SS confidence
	324	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	M	G	Y	G	Q	I	N	D	G	L	N	L	I	T	H	H	S	A	R	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	N	E	G	I	R	D	E	V	L	E	Q	M	F	I	G	N	P	A	A	L	F
Template Known Secondary structure		T	T	T											T
Template Predicted Secondary structure
Template SS confidence
	401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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