Job Description P25524 Confidence 100.00% Date Thu Jan 5 11:41:56 GMT 2012 Rank 9 Aligned Residues 371 % Identity 18% Template c1p1mA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm0936; PDBTitle: structure of thermotoga maritima amidohydrolase tm09362 bound to ni and methionine Resolution 1.50 Å

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		8	.	10	.	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		T	I	I	N	A	R	L	P	G	E	E	G	.	.	.	.	L	W	Q	I	H	L	Q	D	G	K	I	S	A	I	D	A	Q	S	G	V	M	P	I	T	E	N	S	L	D	A	E	Q	G	L	V	I	P	P	F	V	E	P	H	I	H	L	D	T	T	Q	T	A	G	Q	P	N	W	N	Q	S	G	T	L	F
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																	.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		I	I	G	N	C	L	I	L	K	D	F	S	S	E	P	F	W	G	A	V	E	I	E	N	G	T	I	K	R	V	L	Q	.	.	.	.	.	G	E	V	K	V	D	L	D	L	S	G	K	L	V	M	P	A	L	F	N	T	H	T	H	A	P	M	T	L	L	R	G	V	A	E	D	L	S	F	E	E	W	L
Template Known Secondary structure											S	T	T	S											T	T								.	.	.	.	.	S	S				S				T	T														G	G	G	G	G	G	T	T	S	S		S
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	I	E	R	W	A	E	R	K	A	L	L	T	H	D	D	V	K	Q	R	A	W	Q	T	L	K	W	Q	I	A	N	G	I	Q	H	V	R	T	H	V	D	V	S	D	A	T	L	T	A	L	K	A	M	L	E	V	K	Q	E	V	A	P	W	I	D	L	Q	I	V	A	F	P	Q	E	G	I	L	S	Y
Query Conservation
Alig confidence			.	.																																										.	.	.	.	.
Template Conservation			.	.																																										.	.	.	.	.
Template Sequence		F	.	.	S	K	V	L	P	I	E	D	R	L	T	E	K	M	A	Y	Y	G	T	I	L	A	Q	M	E	M	A	R	H	G	I	A	G	F	V	D	M	Y	F	H	E	.	.	.	.	.	E	W	I	A	K	A	V	R	D	F	G	M	R	A	L	L	T	R	G	L	V	D	S	N	G	D	D	G	G	R	L
Template Known Secondary structure			.	.	T	T						T	T																			T	T	T									S	S		.	.	.	.	.																							B	T	T	B		T	T
Template Predicted Secondary structure			.	.																																										.	.	.	.	.
Template SS confidence
		77			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	G	E	A	L	L	E	E	A	L	R	L	G	A	D	V	V	G	A	I	P	H	F	E	F	T	R	E	Y	G	V	E	S	L	H	K	T	F	A	L	A	Q	K	Y	D	R	L	I	D	V	H	C	D	E	I	D	D	E	Q	S	R	F	V	E	T	V	A	A	L	A	H	H	E	G	M	G	A	R	V
Query Conservation
Alig confidence																.																																														.	.	.	.
Template Conservation																.																																														.	.	.	.
Template Sequence		E	E	N	L	K	L	Y	N	E	W	N	G	F	E	.	G	R	I	F	V	G	F	G	P	H	S	P	Y	L	C	S	E	E	Y	L	K	R	V	F	D	T	A	K	S	L	N	A	P	V	T	I	H	L	Y	E	T	S	K	E	E	.	.	.	.	Y	D	L	E	D	I	L	N	I	G	L	K	E	V	K	T
Template Known Secondary structure												T	T	G	G	.	G	T										T	T	T	S															T	T								S		S	T	T			.	.	.	.			T					T	T	T	T	T	T	S
Template Predicted Secondary structure																.																																														.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	S	H	T	T	A	M	H	S	Y	N	G	A	Y	T	S	R	L	F	R	L	L	K	M	S	G	I	N	F	V	A	N	P	L	V	N	I	H	L	Q	G	R	F	D	T	Y	P	K	R	R	G	I	T	R	V	K	E	M	L	E	S	G	I	N	V	C	F	G	H	D	D	V	F	D	P	W	Y	P	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																							.	.
Template Conservation														.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																							.	.
Template Sequence		I	A	A	H	C	V	H	L	P	E	R	Y	.	.	.	.	.	.	.	F	G	V	L	K	D	I	P	F	F	V	S	H	N	P	A	S	N	L	K	L	G	N	.	.	.	.	.	.	.	.	.	G	I	A	P	V	Q	R	M	I	E	H	G	M	K	V	T	L	G	T	D	G	A	.	.	A	S	N	N	S
Template Known Secondary structure							T	T			G	G	G	.	.	.	.	.	.	.	T	T	T	T	T	T	S	S													T	T		.	.	.	.	.	.	.	.	.											T	T										T	.	.	T	T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.										260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.					.	.	.	.	.							390	.	.	.
Predicted Secondary structure																																																															.	.	.	.						.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.						.	.	.	.	.	.
Query Sequence		G	T	A	N	M	L	Q	V	L	H	M	G	L	H	V	C	Q	L	M	G	Y	G	Q	I	N	D	G	L	N	L	I	T	H	H	S	A	R	T	L	N	L	Q	D	Y	G	I	A	A	G	N	S	A	N	L	I	I	L	P	A	E	N	.	.	.	.	G	F	D	A	L	.	.	.	.	.	.	R	R	Q	V
Query Conservation																																																															.	.	.	.						.	.	.	.	.	.
Alig confidence																																																															.	.	.	.						.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	L	F	F	E	M	R	L	A	S	L	L	Q	K	A	Q	N	P	R	N	L	D	V	N	T	C	L	K	M	V	T	Y	D	G	A	Q	A	M	G	F	K	S	G	K	I	E	E	G	W	N	A	D	L	V	V	I	D	L	D	L	P	E	M	F	P	V	Q	N	I	K	N	H	L	V	H	A	F	S	G
Template Known Secondary structure																	T	T		T	T	S	S										T								T		S		S	S			T	T	S	B										S	G	G	G		S	G	G	G								T			S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	R	Y	S	V	R	G	G	K	V	I	A	S	T	Q	P	A	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	F	A	T	M	V	A	G	K	W	I	Y	F	D	G	E	Y	P	T
Template Known Secondary structure				S					T	T						T	T	B		T	T
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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