Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEF0
Confidence99.31%DateThu Jan 5 11:23:10 GMT 2012
Rank10Aligned Residues120
% Identity23%Templatec3pfiB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
Resolution2.69 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.........100.........110.........120.........130.........140.........
Predicted Secondary structure 


















Query SS confidence 















































































Query Sequence  SFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNS
Query Conservation 

 
                            
 
 
  
 





 

   
   
  
       
           
Alig confidence 




.














































...












.........

Template Conservation     
 .

 
     
   
            


 







 

  

  ...             .........  
Template Sequence  NFDGY. IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE. . . XSANIKTTAAPXI. . . . . . . . . EK
Template Known Secondary structure 
STT
.
S
TT




SSTTSS...TT

GGG
.........
S
Template Predicted Secondary structure 
.














...




.........
Template SS confidence 















































































   24.... .30.........40.........50.........60.........70..... ....80........ .90
 
   150.........160.........170.........180.........190.........200......
Predicted Secondary structure 


















Query SS confidence 
























































Query Sequence  GTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNM
Query Conservation                
 




 
           
  

  
       




   
Alig confidence 























..














..













Template Conservation     
           

 



  ..
       
    
 ..      
  
    
Template Sequence  SGDLAAILTNLSEGDILFIDEIHR. . LSPAIEEVLYPAXED. . YPKFTLIGATTRAG
Template Known Secondary structure  ST

TT
SGGG..

T..



S
GG
Template Predicted Secondary structure 





..


..





Template SS confidence 
























































   91........100.........110.... .....120......... 130.........140...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions