Job Description P0AEF0 Confidence 96.20% Date Thu Jan 5 11:23:10 GMT 2012 Rank 415 Aligned Residues 143 % Identity 17% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																												.																			.
Query SS confidence																																												.																			.
Query Sequence		N	Y	R	V	E	C	E	G	Q	M	N	A	L	S	K	A	R	Q	Y	V	E	E	F	D	G	N	I	A	S	F	I	F	S	G	K	P	G	T	G	K	N	H	.	L	A	A	A	I	C	N	E	L	L	L	R	G	K	S	V	L	I	.	I	T	V	A	D	I	M	S	A	M	K	D	T	F	R	N	S	G
Query Conservation																																												.																			.
Alig confidence																			.	.	.	.	.	.	.	.																		.																			.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		G	I	L	K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	.	.	.	.	.	.	.	.	Q	G	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S
Template Known Secondary structure		T			S														.	.	.	.	.	.	.	.	T	T									T	T	S															T					S						S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.									.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		151	.																								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	Q	L	L	N	D	L	S	N	V	D	L	L	V	I	D	E	I	G	V	Q	T	E	S	K	Y	E	K	V	I	I	N	Q	I	V	D	R	R	S	S	S	K	R	P	T	G	M	L	T	N	S	N	M	E
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation																																																										.	.
Template Sequence		Y	K	G	L	K	S	I	C	I	Y	G	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	F	E	P	Q	I	.	.	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D
Template Known Secondary structure			T	T										S															T	T		S			T	T															T	T						.	.							S		S	S								S	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.			.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	T	K	L	L	G	E	R	V	M	D	R	M	R	L	G	N	S	L	W	V	I	F
Query Conservation
Alig confidence						.	.	.	.	.						.
Template Conservation						.	.	.	.	.						.
Template Sequence		T	V	R	Q	.	.	.	.	.	L	A	L	S	Y	.	L	K	D	P	M	I	V	Y	V
Template Known Secondary structure						.	.	.	.	.						.		S	S
Template Predicted Secondary structure						.	.	.	.	.						.
Template SS confidence
		422	.	.	.						.	.	.	.	430		.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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