Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEF0
Confidence100.00%DateThu Jan 5 11:23:10 GMT 2012
Rank3Aligned Residues167
% Identity23%Templatec3ec2A_
PDB info PDB header:replicationChain: A: PDB Molecule:dna replication protein dnac; PDBTitle: crystal structure of the dnac helicase loader
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90.........100 .........110.........120...... ...130.........140
Predicted Secondary structure 











.






.


Query SS confidence 





































.

























.













Query Sequence  RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIA. SFIFSGKPGTGKNHLAAAICNELLLR. GKSVLIITVADIMS
Query Conservation         

 
                           . 
 
 
  
 





 

   
   .
  
       
  
Alig confidence 





































.

























.













Template Conservation         



                             


 







 

 


  
                  
Template Sequence  AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF
Template Known Secondary structure 

S
TT

SSS



SS

GGG



SSSSSS




Template Predicted Secondary structure 






























Template SS confidence 















































































   42.......50.........60.........70.........80.........90.........100.........110.........120.
 
   141........150.........160.........170.........180.........190.........200......... 210..
Predicted Secondary structure 


















........
Query SS confidence 




































































. . . . . . . .


Query Sequence  AMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM. . . . . . . . TKL
Query Conservation                         
 




 
           
  

  
       




    

........   
Alig confidence 




..





























































........


Template Conservation       ..                  




             
  
           
 


     
       
  
Template Sequence  RLKHL. . XDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQRSSVRISADLASR
Template Known Secondary structure  ..T

ST
ST
SSS


TT




S


Template Predicted Secondary structure  ..





















Template SS confidence 















































































   122.... ...130.........140.........150.........160.........170.........180.........190.........
 
   213......220.........230..
Predicted Secondary structure 




Query SS confidence 



















Query Sequence  LGERVMDRMRLGNSLWVIFN
Query Conservation     

 


       
   
Alig confidence 








.









Template Conservation      




. 
      

Template Sequence  LGENVVSKI. YEXNELLVIK
Template Known Secondary structure 
.


Template Predicted Secondary structure  .


Template SS confidence 



















   203......210. ........220.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions