Job Description P0AEF0 Confidence 98.22% Date Thu Jan 5 11:23:10 GMT 2012 Rank 95 Aligned Residues 144 % Identity 18% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.
Query Sequence		N	A	L	S	K	A	R	Q	Y	V	E	E	F	D	G	N	I	A	S	F	I	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	C	N	E	L	L	L	R	G	K	S	V	L	I	I	T	V	A	D	I	M	S	A	M	K	D	T	F	.	.	.	.	.	.	.	.	R	N	S	G	T	S	E	E
Query Conservation																																																																		.	.	.	.	.	.	.	.
Alig confidence																																															.																			.	.	.	.	.	.	.	.
Template Conservation																																															.
Template Sequence		P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	.	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K
Template Known Secondary structure																T	S		S								T	T	S	S																S	.							S	S	S	S		T	T	T										S		S	S	S	S
Template Predicted Secondary structure																																															.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.											.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		Q	L	L	N	D	L	S	N	V	D	L	L	V	I	D	E	I	G	V	Q	T	E	S	K	Y	E	K	V	I	I	N	Q	I	V	D	R	R	S	S	S	K	R	.	.	.	.	.	.	.	.	.	.	P	T	G	M	L	T	N	S	N	M	E	E	M	T	K	L	.	.	L	G	E	R	V	M	D	R	M	R
Query Conservation																																												.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence																					.	.																						.	.	.	.	.	.	.	.	.	.																	.	.										.
Template Conservation																					.	.																																																											.
Template Sequence		K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	.	.	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	.
Template Known Secondary structure								T	T	T	S						T	G	G	G	.	.	S															S					B	T																S	S								T	T	S	S									.
Template Predicted Secondary structure																					.	.																																																											.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		223	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	N	S	L	W	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	F	Q	I	Y	L	P
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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