Job Description P0AEF0 Confidence 99.23% Date Thu Jan 5 11:23:10 GMT 2012 Rank 14 Aligned Residues 146 % Identity 19% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Q	M	N	A	L	S	K	A	R	Q	Y	V	E	E	F	D	G	N	I	A	S	F	I	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	C	N	E	L	L	L	R	G	K	S	V	L	I	I	T	V	A	D	I	M	S	A	M	K	D	T	F	R	N	S	G	T	S	E	E	Q	L	L	N
Query Conservation
Alig confidence																																														.	.	.																	.	.	.	.	.	.
Template Conservation																																														.	.	.																	.	.	.	.	.	.
Template Sequence		E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	.	.	.	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	M	.	.	.	.	.	.	W	F	G	E	S	E	A	N	V	R	E
Template Known Secondary structure																T	S						S								T	T	S													.	.	.	T	T															.	.	.	.	.	.		T	T	T		T
Template Predicted Secondary structure																																														.	.	.																	.	.	.	.	.	.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.				.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550							.	.	.	.	.	.	.	.	.	560	.
		159	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.													.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																	.																													.
Query SS confidence								.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																	.																													.
Query Sequence		D	L	S	N	V	D	.	.	.	.	.	L	L	V	I	D	E	I	G	V	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	E	S	K	Y	E	K	V	I	I	N	Q	I	V	D	R	R	.	S	S	S	K	R	P	T	G	M	L	T	N	S	N	M	E	E	M	T	K	L	L	G	E	R	V	M	D	.
Query Conservation								.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																	.																													.
Alig confidence								.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.											.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	.	.	.	.	.	P	D	I	I	D	P	A	I	L	R	P
Template Known Secondary structure			T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	S		T	T	S	S								S		.	.	.	.	.	G	G	G			G	G	G	T	S	T
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.						.	.	.	.	630	.	.	.	.	.	.
			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	R	M	R	L	G	N	S	L	W	V	I	F	N	W	D	S	Y	R	S	R	V
Query Conservation		.
Alig confidence		.			.	.
Template Conservation					.	.
Template Sequence		G	R	L	.	.	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	I
Template Known Secondary structure		T	T	S	.	.											T	T
Template Predicted Secondary structure					.	.
Template SS confidence
		637	.	.			640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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