Job Description P0AEF0 Confidence 96.82% Date Thu Jan 5 11:23:10 GMT 2012 Rank 331 Aligned Residues 162 % Identity 14% Template c2kbeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: solution structure of amino-terminal domain of dbp5p Resolution UNK

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.											.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.																																												.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.																																												.	.	.
Query Sequence		R	P	L	H	Q	N	C	S	F	E	N	Y	R	V	E	C	E	G	Q	M	N	A	L	S	.	.	.	.	.	.	.	.	.	.	K	A	R	Q	Y	V	E	E	F	D	G	N	I	A	S	F	I	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	C	N	E	L	L	L	R	G	K	S	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.																																												.	.	.
Alig confidence														.												.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Conservation														.
Template Sequence		S	P	L	Y	S	A	K	S	F	D	E	L	.	G	L	A	P	E	L	L	K	G	I	Y	A	M	K	F	Q	K	P	S	K	I	Q	E	R	A	L	P	L	L	L	H	N	P	P	R	N	M	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	S	L	T	M	L	T	R	V	N	P	E	D	A	S	P	Q
Template Known Secondary structure									S					.	S	S											S	S	S	S				S									S	S			S	S							S	S	T	T																		T	T
Template Predicted Secondary structure														.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.																																			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	V	L	I	I	T	V	A	D	I	M	S	A	M	K	D	T	F	R	N	S	G	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	Q	L	L	N	D	L	S	N	V	D	L	L	V	I	D	E	I	G	V	Q
Query Conservation		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	C	L	A	P	S	R	E	L	A	R	Q	T	L	E	V	V	Q	E	M	G	K	F	T	K	I	T	S	Q	L	I	V	P	D	S	F	E	K	N	K	Q	I	N	A	Q	V	I	V	G	T	P	G	T	V	L	D	L	M	R	R	K	L	M	Q	L	Q	K	I	K	I	F	V	L	D	E	A	D	N	M
Template Known Secondary structure							S	S															S	T	T		S							S	T	T		S			S	S					S						T	T	T							T	T	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	S	K	Y	E	K	V	I	I	N	Q	I	V	D	R	R	S	S	S	K	R	P	T	G	M	L	T	N	S	N	M	E	E	M	T	K	L	L	G	E	R	V	M	D	R	M	R	L	G	N	S	L	W	V	I	F	N
Query Conservation
Alig confidence																.																							.	.	.	.	.						.
Template Conservation																.																							.	.	.	.	.						.
Template Sequence		L	D	Q	Q	G	L	G	D	Q	C	I	R	V	K	.	R	F	L	P	K	D	T	Q	L	V	L	F	S	A	T	F	A	D	A	V	R	Q	.	.	.	.	.	Y	A	K	K	I	.	V	P	N	A	N	T	L	E	L	Q
Template Known Secondary structure				S	T	T										.			T	T	T	T	S							S									.	.	.	.	.						.	S	T	T	S
Template Predicted Secondary structure																.																							.	.	.	.	.						.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.		.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions