Job Description P0AEF0 Confidence 99.11% Date Thu Jan 5 11:23:10 GMT 2012 Rank 24 Aligned Residues 163 % Identity 22% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		Q	N	C	S	F	E	N	Y	R	V	E	C	E	G	Q	M	N	A	L	S	K	A	R	Q	Y	V	E	E	F	.	.	.	.	.	.	.	D	G	N	I	A	S	F	I	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	C	N	E	L	L	L	R	G	K	S	V	L	I	I	T	V	A	D	I	M
Query Conservation																															.	.	.	.	.	.	.
Alig confidence										.																					.	.	.	.	.	.	.																													.	.
Template Conservation										.																																																								.	.
Template Sequence		P	N	V	K	W	S	D	V	.	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L	V
Template Known Secondary structure						G	G	G	S	.		S																			G	G	G	S		T	T					S						S	S	S	S	S													T	.	.	T	S										S	S
Template Predicted Secondary structure										.																																																								.	.
Template SS confidence
		129	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		S	A	M	K	D	T	F	R	N	S	G	T	S	E	E	Q	L	L	N	D	L	S	N	V	D	L	L	V	I	D	E	I	G	V	Q	T	E	S	.	.	.	.	.	.	.	.	.	K	Y	E	K	V	I	I	N	Q	I	V	D	R	R	S	S	S	K	.	.	R	P	T	G	M	L	T	N	S	N	M	E	E
Query Conservation																																								.	.	.	.	.	.	.	.	.																			.	.
Alig confidence																		.																						.	.	.	.	.	.	.	.	.																			.	.										.	.	.	.
Template Conservation																		.																																																												.	.	.	.
Template Sequence		S	K	W	L	G	E	S	E	K	L	V	K	N	L	F	Q	.	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I	.	.	.	.
Template Known Secondary structure			S	S			S											.					T	S	S							T	T	T	G	G	G			S	S	S			T	T																S	S	S			T	T								S		.	.	.	.
Template Predicted Secondary structure																		.																																																												.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	K	L	L	G	E	R	V	M	D	R	M	R	L	G	N	S	L	W	V	I	F	N	W	D	S	Y	R	S	R	V
Query Conservation
Alig confidence		.														.	.
Template Conservation		.														.	.
Template Sequence		.	P	W	V	L	D	S	A	I	R	R	R	F	E	.	.	K	R	I	Y	I	P	L	P	E	P	H	A	R	A	A	M
Template Known Secondary structure		.	T	T	T	S							T			.	.
Template Predicted Secondary structure		.														.	.
Template SS confidence
			281	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions