Job Description P0AEF0 Confidence 98.39% Date Thu Jan 5 11:23:10 GMT 2012 Rank 75 Aligned Residues 144 % Identity 19% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.										.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.
Query Sequence		N	A	L	S	K	A	R	Q	Y	V	E	E	F	D	G	N	I	A	S	F	I	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	C	N	E	L	L	L	R	G	K	S	V	L	I	I	T	V	.	.	.	.	.	.	.	.	.	A	D	I	M	S	A	M	K	D	T	F	R	N	S	G	T	S	E
Query Conservation																																																							.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K
Template Known Secondary structure															T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S	S	T	T			S		B
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190											.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		E	Q	L	L	N	D	L	S	N	V	D	L	L	V	I	D	E	I	G	V	Q	T	E	S	K	Y	E	K	V	I	I	N	Q	I	V	D	R	.	.	.	.	.	.	.	.	.	.	R	S	S	S	K	R	P	T	G	M	L	T	N	S	N	M	E	E	M	T	K	L	.	.	L	G	E	R	V	M	D	R	M
Query Conservation																																							.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence								.														.	.																.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation								.														.	.
Template Sequence		E	G	F	F	E	L	.	A	D	G	G	T	L	F	L	D	E	I	G	E	.	.	L	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L
Template Known Secondary structure								.	T	T	T	S						S	G	G	G	.	.																S					B	T			S													S	S								T	T	S	S
Template Predicted Secondary structure								.														.	.
Template SS confidence
		224	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		222	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	N	S	L	W	V	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	G	V	I	E	I	E	I	P
Template Known Secondary structure		.	T	T
Template Predicted Secondary structure		.
Template SS confidence
			301	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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