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Job DescriptionP0AGC0
Confidence35.22%DateThu Jan 5 11:28:42 GMT 2012
Rank7Aligned Residues440
% Identity10%Templatec3mkuA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
Resolution4.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.... .....70.........80.........90......
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Query Sequence  VRRKMWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMISTYGLSM. TQLGMIGLGFSITYGVGKTLVSYYADGKNTKQ.
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Template Sequence  ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNG
Template Known Secondary structure 
TTTTTTTTGGG
TTS
S
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
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Query Sequence  . . . . . . . . . . . . . . . . . FLPFMLILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGT
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Template Sequence  AGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTK
Template Known Secondary structure  SSSSSS
SS
SSTTTTTT
TTS


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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
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Query Sequence  FLGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPESYGLGKAEELFGEEISEEDKE
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Template Conservation            
  
     
             
                                              
Template Sequence  PAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRL
Template Known Secondary structure  TT
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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  TESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRIGIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLS
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Template Sequence  FRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG
Template Known Secondary structure  T

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STTTGGGSS


TTTT
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   242.......250.........260.........270.........280.........290.........300.........310.........320.
 
   320.........330.........340.........350.........360.........370.........380.........390.........
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Query Sequence  DLANGRRGLVACIALALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYLIG
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Template Sequence  LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVL
Template Known Secondary structure  TSS
SSTTGGGSS
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   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   400.........410.........420.........430.........440.........450.........460
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Query Sequence  DSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERKIRREKKIQQL
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Template Sequence  GLPTGYILGMTN. . WLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLAA
Template Known Secondary structure  ..SSS

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TGGGSTTT

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   402.......410... ......420.........430.........440.........450.........460
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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