Return to main results Retrieve Phyre Job Id

Job DescriptionP38036
Confidence99.98%DateThu Jan 5 11:57:49 GMT 2012
Rank34Aligned Residues268
% Identity16%Templated2bmfa2
SCOP infoP-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RNA helicase
Resolution2.41

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   301........310.........320.........330.........340.........350.........360.........370.........380
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Query Sequence  DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFN
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Template Sequence  DDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRG. LRTLILAPTRVVAAEMEEALRGLPIRYQTGR. . . . . . . . . . . .
Template Known Secondary structure  SSSSSTT



TTSSTTTTT.

SSTTTS

B




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   180.........190.........200.........210..... ....220.........230.........240......
 
   381........390.........400.........410.........420.........430.........440.........450.........460
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Query Sequence  HLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EIVDLMCHATFTMRLLSPIRVP. . . . . . NYNLIIMDEAHFTDPA
Template Known Secondary structure  ....................................
STSSS


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SSTT

S
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   255....260.........270...... ...280.........290..
 
   461........470.........480.........490.........500.........510.........520.........530.........540
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Query Sequence  MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI
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Template Sequence  SIAARGYISTRVEMGEAAGIFMTATPP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GSRDPFPQS
Template Known Secondary structure  TS

SS
T............................................T


SS


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   293......300.........310......... 320........
 
   541........550.........560.........570.........580.........590.........600.........610.........620
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Query Sequence  QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF
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Template Sequence  NAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKN. . . GKKVIQLSRKTFDSEYIKT. . . . . . . .
Template Known Secondary structure  SS





S

SS

SS
S

S
...T




TT
GGGG........
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   329330.........340.........350.........360.........370........ .380.........390.......
 
   621........630.........640.........650 .........660.........670........
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Query Sequence  GKNGKRNVGRILVATQVVEQSLDVDFDWLI. . . . . . . . . . . . . . . . . . . . . . TQHCPADLLFQRLGRLHRHHRKYRPAGF
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Template Sequence  . . . . RTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI
Template Known Secondary structure  ....GTS

S
GGGGTT




S


SSS


TTSS
SSS


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   398.400.........410.........420.........430.........440.........450.........460.........470...
 
   679680..
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Query Sequence  EIPV
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Template Conservation      
Template Sequence  YMGE
Template Known Secondary structure 
S
Template Predicted Secondary structure 

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   474...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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