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Job DescriptionP38036
Confidence100.00%DateThu Jan 5 11:57:49 GMT 2012
Rank4Aligned Residues346
% Identity17%Templatec4a4zA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   277..280.........290 .........300.........310.........320.........330.........340.........350.
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Query Sequence  KRCYEGVHALLDNG. . . . . YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN
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Template Sequence  NHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM. . TKTIYTSPIKALSN
Template Known Secondary structure  T


TT
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S


SS


TT


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S
GGG
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   309310.........320.........330.........340.........350.........360.........370.. .......380......
 
   352.......360.........370.........380.........390.........400.........410.........420.........430.
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Query Sequence  AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV
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Template Sequence  QKFRDFKETF. . . . . . VNIGLITGDVQINPD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ANCLIMTTEILRSML
Template Known Secondary structure  TT
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SS

TT..................................SS
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   387..390...... ...400.........410. ........420......
 
   432.......440.........450....... ..460.........470.........480.........490. ........500.........
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Query Sequence  LPVKHRFIRGLGIGRSVLIVDEVHAY. DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK. QKLLDTYGLHTDPVENNS
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Template Sequence  YRGADLI. . . . . RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQ. HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTP
Template Known Secondary structure  T
SGG.....GG

TT


TT
TT

S
T.T



TTT


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   429430..... ....440.........450.........460....... ..470.........480.........490.........500..
 
   510.........520.........530.........540.........550.........560........ .570.........580........
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Query Sequence  AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA. QVCLICNLVDVAQVCYQRLK
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Template Sequence  KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLE
Template Known Secondary structure  S
SS
TT
TT

B





TTTT

S
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   503......510.........520.........530.........540.........550.........560.........570.........580..
 
   589590...... ...600.........610.........620.........630..
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Query Sequence  ELNNTQVD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRIL
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Template Sequence  GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILF. . . . . . . . SKGFIKVL
Template Known Secondary structure  T




TTS
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TTT
TTS
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   648.650.........660.........670.........680.........690.........700.........710. ........
 
   633......640.........650.. .......660.........670........
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Query Sequence  VATQVVEQSLDVDFDWLITQ. . . . . . . . . . . HCPADLLFQRLGRLHRHHRKYRPAGF
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Template Sequence  FATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI
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TS




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STT

GGG

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   720.........730.........740.........750.........760.........770......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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