Job Description P38036 Confidence 100.00% Date Thu Jan 5 11:57:49 GMT 2012 Rank 8 Aligned Residues 227 % Identity 23% Template c3skdA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein tthb187; PDBTitle: crystal structure of the thermus thermophilus cas3 hd domain in the2 presence of ni2+ Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		K	Y	I	C	H	Y	W	G	K	S	S	K	S	L	T	K	G	N	D	I	H	L	L	I	Y	H	C	L	D	V	A	A	V	A	D	C	W	W	D	Q	S	V	.	V	L	Q	N	T	F	C	R	N	E	M	L	S	K	Q	R	V	K	A	W	L	L	F	F	I	A	L	H	D	I	G	K	F	D	I	R	F
Query Conservation																																												.
Alig confidence												.	.	.	.	.	.																											.
Template Conservation												.	.	.	.	.	.
Template Sequence		M	A	A	L	A	L	W	A	K	S	.	.	.	.	.	.	G	N	P	F	H	P	L	L	A	H	M	L	D	T	A	A	V	A	L	A	V	L	R	M	E	P	P	R	T	R	A	L	Y	A	E	D	W	G	L	P	E	E	G	A	L	A	W	A	A	A	L	V	G	L	H	D	L	G	K	A	S	P	V	F
Template Known Secondary structure										B	S	.	.	.	.	.	.	S	S	T	T	S	B																			S													T	S															G	G	G	G	G	G	S	S	G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.							.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	K	S	A	E	S	W	L	K	L	N	P	A	T	P	S	L	N	G	P	S	T	Q	M	C	R	K	F	N	H	G	A	A	G	L	Y	W	F	N	Q	D	S	L	S	E	Q	S	L	G	D	F	F	S	F	F	D	A	A	P	H	P	Y	E	S	W	F	P	W	V	E	A	V	T	G	H	H	G	F	I
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	W	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	G	V	F	T	E	L	F	L	R	R	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	K	G	L	P	E	R	A	A	N	D	L	A	A	A	L	G	A	H	H	G	F	P
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.			T	T													T	S	S	B	T	T	B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.																										.	.	.	.	.	.	.	90	.	.	.	.	.	.														.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	S	Q	D	Q	D	K	S	R	W	E	M	P	A	S	L	A	S	Y	A	A	Q	D	K	Q	A	R	E	E	W	I	S	V	L	E	A	L	F	L	T	P	A	G	L	S	I	N	D	I	P	P	D	C	S	S	L	L	A	G	F	C	S	L	A	D	W	L	G	S	W	T	T	T	N	T	F	L	F	N
Query Conservation
Alig confidence												.	.	.	.																															.	.	.	.																															.	.
Template Conservation												.	.	.	.																															.	.	.	.																															.	.
Template Sequence		A	N	A	E	E	K	S	R	A	R	.	.	.	.	R	H	L	R	T	E	D	P	L	W	K	E	A	R	R	W	L	L	E	E	V	F	R	R	L	G	A	P	L	P	.	.	.	.	P	A	R	P	E	A	V	L	R	V	M	A	L	A	S	F	A	D	W	V	A	S	D	P	S	L	F	P	Y	G	.	.
Template Known Secondary structure												.	.	.	.						S		T																		T					.	.	.	.																						T		T	T	T	S		S		.	.
Template Predicted Secondary structure												.	.	.	.																															.	.	.	.																															.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		E	D	A	P	S	D	I	N	A	L	R	T	Y	F	Q	D	R	Q	Q	D	A	S	R	V	L	E	L	S	G	L	V	S	N	K	R	C	.	Y	E	G	V	H	A	L	L	D	N	G
Query Conservation																																						.
Alig confidence		.	.	.	.	.																																.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	R	D	P	R	R	G	D	Y	L	K	E	A	L	R	L	A	Q	E	A	L	N	R	L	G	W	P	A	F	A	K	A	Q	R	R	E	F	G	E	L	F	P	Y	I
Template Known Secondary structure		.	.	.	.	.			T	T	S	T	T																		S	T	T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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