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Job DescriptionP38036
Confidence99.80%DateThu Jan 5 11:57:49 GMT 2012
Rank72Aligned Residues163
% Identity18%Templatec3llmB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   294.....300.........310.........320.........330......... 340.........350.........360.........370
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Query Sequence  RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADS. . . VIFALPTQATANAMLTRMEASASHLFSSPNL
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Template Sequence  KKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCG
Template Known Secondary structure  GGG
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   391........400.........410.........420.........430.........440.........450.........460.........470
 
   371........380.........390.........400.........410.........420.........430.........440.........450
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Query Sequence  ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLI
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Template Sequence  YSVRFESILPRP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HASIXFCTVGVLLRKLEAG. . . . . . . . IRGISHVI
Template Known Secondary structure  TT


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   471........480.. .......490.........500. ........
 
   451........460.........470.... .....480.........490.......
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Query Sequence  VDEVHAYDTYMNGLLEAVLKAQAD. VGGSVILLSATLPMKQKQKLLDT
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Template Sequence  VDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFFN
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   510.........520.........530.........540.........550.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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