Job Description P38036 Confidence 100.00% Date Thu Jan 5 11:57:49 GMT 2012 Rank 19 Aligned Residues 299 % Identity 16% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

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		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		R	Q	L	Q	V	L	V	D	A	L	P	V	A	P	G	L	T	V	I	E	A	P	T	G	S	G	K	T	E	.	T	A	L	A	Y	A	W	K	L	I	D	Q	Q	I	A	D	S	V	I	F	A	L	P	T	Q	A	T	A	N	A	M	L	T	R	M	E	A	S	A	S	H	L	F	S	S	P	N	L	I	L
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H	L	E	N	T	Q	V	A	C	T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E	E	V	G	Y	S
Template Known Secondary structure		G	G	G												S								T	T	S	S															G	G	G	G	T								S																T	T			B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	G	N	S	R	F	N	H	L	F	Q	S	I	K	S	R	A	I	T	E	Q	G	Q	E	E	A	W	V	Q	C	C	Q	W	L	S	Q	S	N	K	K	V	F	L	G	Q	I	G	V	C	T	I	D	Q	V	L	I	S	V	L	P	V	K	H	R	F	I	R	G	L	G	I	G	R	S	V	L	I	V	D
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		I	R	F	E	N	K	T	S	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	L	S	.	.	.	.	.	.	R	Y	S	C	I	I	L	D
Template Known Secondary structure			T	T						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T		T	.	.	.	.	.	.	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.																																			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		E	V	H	A	Y	D	T	Y	M	N	G	L	L	E	A	V	L	K	A	Q	A	D	.	V	G	G	S	V	I	L	L	S	A	T	L	P	M	K	Q	K	Q	K	L	L	D	T	Y	G	L	H	T	D	P	V	E	N	N	S	A	Y	P	L	I	N	W	R	G	V	N	G	A	Q	R	F	D	L	L	A	H	P
Query Conservation																								.
Alig confidence																								.															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	H	E	R	T	L	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A	T	L	D	A	.	.	.	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G																				T	T								S	S	S			.	.	.							T	T	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.			.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.									.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure																																				.	.																											.	.	.	.	.	.	.	.
Query SS confidence																																				.	.																											.	.	.	.	.	.	.	.
Query Sequence		E	Q	L	P	P	R	F	S	I	Q	P	E	P	I	C	L	A	D	M	L	P	D	L	T	M	L	E	R	M	I	A	A	A	N	.	.	A	G	A	Q	V	C	L	I	C	N	L	V	D	V	A	Q	V	C	Y	Q	R	L	K	E	L	N	.	.	.	.	.	.	.	.	N	T	Q	V	D	I	D	L	F	H
Query Conservation																																				.	.																											.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																										.	.																											.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	E	L	Y	Y	T	P	E	F	Q	R	D	Y	L	D	S	A	I	R	T	V	L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K	I	S	L	E	G	D	Q	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.						S	S			S																	S		S								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.						630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.	.	.	.	650	.	.																					.	.	.
Predicted Secondary structure																														.	.	.	.	.																	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.																	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	F	T	L	N	D	R	R	E	K	E	N	R	V	I	S	N	F	G	K	N	G	K	R	N	V	G	.	.	.	.	.	R	I	L	V	A	T	Q	V	V	E	Q	S	L	D	V	D	.	F	D	W	L	I	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	C	P
Query Conservation																														.	.	.	.	.																	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.						.	.	.	.	.																	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	.	.	.	.	.	.	.	.	P	E	S	H	N	G	R	P	G	R	K	V	V	I	S	T	N	I	A	E	T	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E	S	L	L	V	S	P	I	S
Template Known Secondary structure		T	T							G	G	G	G	S			.	.	.	.	.	.	.	.				S	S	S	S										T					S				T	T																	T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360									.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	L	F	Q	R	L	G	R	L	H	R	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R
Template Known Secondary structure											G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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