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Job DescriptionP38036
Confidence99.98%DateThu Jan 5 11:57:49 GMT 2012
Rank35Aligned Residues320
% Identity18%Templatec3fhtA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   292.......300.... .....310.........320.........330..... ....340.........350.........360........
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Query Sequence  QPRQLQVLVDALP. . VAPGLTVIEAPTGSGKTETALAYAWKLIDQQ. IADSVIFALPTQATANAMLTRMEASASHLFSSP
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Template Sequence  RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK
Template Known Secondary structure  S

SSS




TTS


TTS
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SSTTTSTT

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   114.....120.........130.........140.........150.........160.........170.........180.........190...
 
   369370.........380.........390.........400.........410.........420.........430.........440........
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Query Sequence  NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSV
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Template Sequence  LAYAVRGNKLERGQKIS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EQIVIGTPGTVLDWCSKLKFIDP. . . . KKIKV
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TT



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S
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G....GG

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   194.....200.........210 .........220.........230... .....
 
   449450....... ..460.........470.........480.........490.........500.........510.........520.......
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Query Sequence  LIVDEVHAY. DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL
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Template Sequence  FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET. . . . . . . . . . . . . . .
Template Known Secondary structure  TSTTTTTS
TT
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   239240.........250.........260.........270.........280.........290.........300...
 
   528.530.........540.........550.........560.........570.........580.........590.........600.......
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Query Sequence  LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN
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Template Sequence  . . . . . . . . . . LDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE. . . GHQVALLSGEMMVE
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TT
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SST...T



TTS
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   304.....310.........320.........330.........340.........350...... ...360.........370
 
   608.610.........620.........630.........640..... ....650....... ..660.........670........
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Query Sequence  DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD. FDWLITQHCPAD. . . . . . . . LLFQRLGRLHRHHRKYRPAGF
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Template Sequence  QRAAVIERF. . . . . . . . REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM
Template Known Secondary structure  ........TTS
S
GGGTSS


TTSS

B
SSSSB
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TT

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   371........ 380.........390.........400.........410.........420.........430.........440..
 
   679680..
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Query Sequence  EIPV
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Template Conservation      
Template Sequence  VDSK
Template Known Secondary structure 
S
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   443...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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