Job Description P38036 Confidence 99.80% Date Thu Jan 5 11:57:49 GMT 2012 Rank 71 Aligned Residues 209 % Identity 17% Template c3berA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx47; PDBTitle: human dead-box rna-helicase ddx47, conserved domain i in complex with2 amp Resolution 1.40 Å

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		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.
Predicted Secondary structure																													.																																															.
Query SS confidence																													.																																															.
Query Sequence		R	V	L	E	L	S	G	L	V	S	N	K	R	C	Y	E	G	V	H	A	L	L	D	N	G	Y	Q	.	P	R	Q	L	Q	V	L	V	D	A	L	P	V	A	P	G	L	T	V	I	E	A	P	T	G	S	G	K	T	E	T	A	L	A	Y	A	W	K	L	I	D	Q	Q	I	A	D	.	S	V	I	F	A
Query Conservation																													.																																															.
Alig confidence																													.																																															.
Template Conservation
Template Sequence		E	E	E	E	T	K	T	F	K	D	L	G	V	T	D	V	L	C	E	A	C	D	Q	L	G	W	T	K	P	T	K	I	Q	I	E	A	I	P	L	A	L	Q	G	R	D	I	I	G	L	A	E	T	G	S	G	K	T	G	A	F	A	L	P	I	L	N	A	L	L	E	T	P	Q	R	L	F	A	L	V	L
Template Known Secondary structure									T	G	G	G	T												T	T			S														T	T									T	T	S																	S			S	S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	T	Q	A	T	A	N	A	M	L	T	R	M	E	A	S	A	S	H	L	F	S	S	P	N	L	I	L	A	H	G	N	S	R	F	N	H	L	F	Q	S	I	K	S	R	A	I	T	E	Q	G	Q	E	E	A	W	V	Q	C	C	Q	W	L	S	Q	S	N	K	K	V	F	L	G	Q	I	G	V	C	T
Query Conservation
Alig confidence																								.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	T	R	E	L	A	F	Q	I	S	E	Q	F	E	A	L	G	S	S	I	G	.	.	V	Q	S	A	V	I	V	G	G	I	D	S	M	S	Q	S	L	A	L	A	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	I	I	I	A	T
Template Known Secondary structure			S	S																G	G	G	T	.	.								T	T	S											T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																								.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																												.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		I	D	Q	V	L	I	S	V	L	P	V	K	H	R	F	I	R	G	L	G	I	G	R	S	V	L	I	V	D	E	V	H	A	Y	.	D	T	Y	M	N	G	L	L	E	A	V	L	K	A	Q	A	D	V	G	G	S	V	I	L	L	S	A	T	L	P	M	K	Q	K	Q	K	L	L	D	T	Y	G	L	H	T
Query Conservation																																				.
Alig confidence																		.	.	.	.															.																		.
Template Conservation																		.	.	.	.																																	.
Template Sequence		P	G	R	L	I	D	H	L	E	N	T	K	G	F	N	L	.	.	.	.	R	A	L	K	Y	L	V	M	D	E	A	D	R	I	L	N	M	D	F	E	T	E	V	D	K	I	L	K	V	I	P	R	.	D	R	K	T	F	L	F	S	A	T	M	T	K	K	V	Q	K	L	Q	R	A	A	L	K	N	P	V
Template Known Secondary structure												S	T	T				.	.	.	.	T	T								S							T	T											S	S		S	.	S	S							S	S														S	S
Template Predicted Secondary structure																		.	.	.	.																																	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		503	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	V	E	N	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	C	A	V	S	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions