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Job DescriptionP38036
Confidence99.95%DateThu Jan 5 11:57:49 GMT 2012
Rank49Aligned Residues323
% Identity17%Templatec2w74B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein; PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp
Resolution2.74 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   293......300... ......310.........320.........330.........340.........350........
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Query Sequence  PRQLQVLVDAL. . . . . . . . . . . . . . PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME
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Template Sequence  MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQ
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SSGGGS
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   272.......280.........290.........300.........310.........320.........330.........340.........350.
 
   359360.........370.........380.........390.........400.........410.........420.........430........
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Query Sequence  ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF
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Template Sequence  R. . . . . FSPDSVNGSENTAGLKRNLDKDD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . NKIIVTTIQKLNNLMKAES. . .
Template Known Secondary structure  T.....TSTT

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   352 .......360.........370..... ....380.........390....
 
   439440.........450.........460.........470.........480.........490.........500.........510........
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Query Sequence  IRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRG
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Template Sequence  DLPVYNQQVVFIFDECHR. . SQFGEAQKNLKKKFK. . RYYQFGFTGTPI. . . . . . . . . . . . . . . FPENALGSETTASVFG
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   395....400.........410.. .......420....... ..430......... 440.........450.....
 
   519520.........530.........540.........550.........560..... ....570.........580....
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Query Sequence  VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN. . . . . . . . . . . . . . AGAQVCLICNLVDVAQVCY
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Template Sequence  RELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETERIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYY
Template Known Secondary structure  S
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TTTTTTT


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   456...460.........470.........480.........490.........500.........510.........520.........530.....
 
   585....590. ........600.........610.........620.........630...
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Query Sequence  QRLKELN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILV
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Template Sequence  ATFKPLRIATIFSFAGEISDETFDTAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRV. . . . . . . . KNQDIDLLI
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   555....560.........570.........580.........590.........600.........610....... ..620......
 
   634.....640.........650........ .660.........670.........
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Query Sequence  ATQVVEQSLDVDFDWLITQHCPADL. . LFQRLGRLHRHHRKYRPAGFE
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Template Sequence  VVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNI
Template Known Secondary structure  SSTTSSS


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   655....660.........670.........680.........690.........700..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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