Job Description P38036 Confidence 99.97% Date Thu Jan 5 11:57:49 GMT 2012 Rank 41 Aligned Residues 315 % Identity 17% Template c2vsxA_ PDB info PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex Resolution 2.8 Å

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		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																					.																																													.
Query SS confidence																					.																																													.
Query Sequence		L	V	S	N	K	R	C	Y	E	G	V	H	A	L	L	D	N	G	Y	.	Q	P	R	Q	L	Q	V	L	V	D	A	L	P	V	A	P	G	L	T	V	I	E	A	P	T	G	S	G	K	T	E	T	A	L	A	Y	A	W	K	L	I	D	Q	Q	.	I	A	D	S	V	I	F	A	L	P	T	Q	A	T	A
Query Conservation																					.																																													.
Alig confidence																					.																																													.
Template Conservation
Template Sequence		F	D	D	M	E	L	D	E	N	L	L	R	G	V	F	G	Y	G	F	E	E	P	S	A	I	Q	Q	R	A	I	M	P	I	I	E	G	H	D	V	L	A	Q	A	Q	S	G	T	G	K	T	G	T	F	S	I	A	A	L	Q	R	I	D	T	S	V	K	A	P	Q	A	L	M	L	A	P	T	R	E	L	A
Template Known Secondary structure		G	G	G	G	T											T	T	T			S														T	T									T	T	S	S															T	T			S								S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	M	L	T	R	M	E	A	S	A	S	H	L	F	S	S	P	N	L	I	L	A	H	G	N	S	R	F	N	H	L	F	Q	S	I	K	S	R	A	I	T	E	Q	G	Q	E	E	A	W	V	Q	C	C	Q	W	L	S	Q	S	N	K	K	V	F	L	G	Q	I	G	V	C	T	I	D	Q	V	L	I	S
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	I	Q	K	V	V	M	A	L	A	F	H	M	D	I	K	V	H	A	C	I	G	L	R	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	V	V	G	T	P	G	R	V	F	D	N
Template Known Secondary structure												T	S	S	S											S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																																									.	.	.	.	.	.	.	.	.	140	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	P	V	K	H	R	F	I	R	G	L	G	I	G	R	S	V	L	I	V	D	E	V	H	A	Y	D	T	Y	M	N	G	L	L	E	A	V	L	K	A	Q	A	D	V	G	G	S	V	I	L	L	S	A	T	L	P	M	K	Q	K	Q	K	L	L	D	T	Y	G	L	H	T	D	P	V	E	N	N	S	A
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		I	Q	R	R	R	F	R	T	.	.	.	.	.	D	K	I	K	M	F	I	L	D	E	A	D	E	M	L	S	S	G	F	K	E	Q	I	Y	Q	I	F	T	L	L	P	P	T	T	Q	V	V	L	L	S	A	T	M	P	N	D	V	L	E	V	T	T	K	F	M	R	N	P	V	R	I	L	V	K	K	D	E
Template Known Secondary structure				T	T		S			.	.	.	.	.	T	T								S							T	T												S		T	T								S															S	S
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.						.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	L	I	N	W	R	G	V	N	G	A	Q	R	F	D	L	L	A	H	P	E	Q	L	P	P	R	F	S	I	Q	P	E	P	I	C	L	A	D	M	L	P	D	L	T	M	L	E	R	M	I	A	A	A	N	A	G	A	Q	V	C	L	I	C	N	L	V	D	V	A	Q	V	C	Y	Q	R	L	K	E	L
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	G	I	K	Q	F	Y	V	N	V	E	E	E	E	Y	K	Y	E	C	L	T	D	L	Y	D	S	I	S	V	T	Q	A	V	I	F	C	N	T	R	R	K	V	E	E	L	T	T	K	L	R	N	D
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T										S	G	G	G												S			S							S	S														T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		229	230																										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.	.	.	.	650	.	.	.	.	.			.	.	.	.	660	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.											.	.
Query SS confidence																																																									.											.	.
Query Sequence		N	N	T	Q	V	D	I	D	L	F	H	A	R	F	T	L	N	D	R	R	E	K	E	N	R	V	I	S	N	F	G	K	N	G	K	R	N	V	G	R	I	L	V	A	T	Q	V	V	E	Q	S	L	D	V	D	.	F	D	W	L	I	T	Q	H	C	P	.	.	A	D	L	L	F	Q	R	L	G	R	L	H
Query Conservation																																																									.											.	.
Alig confidence		.	.	.																								.	.	.	.	.	.	.	.																						.											.	.
Template Conservation		.	.	.																								.	.	.	.	.	.	.	.
Template Sequence		.	.	.	K	F	T	V	S	A	I	Y	S	D	L	P	Q	Q	E	R	D	T	I	M	K	E	F	.	.	.	.	.	.	.	.	R	S	G	S	S	R	I	L	I	S	T	D	L	L	A	R	G	I	D	V	Q	Q	V	S	L	V	I	N	Y	D	L	P	A	N	K	E	N	Y	I	H	R	I	G	R	K	G
Template Known Secondary structure		.	.	.	T								T	T	S													.	.	.	.	.	.	.	.	T	T	T	S		S						S	G	G	G	S	S					S							S	S			S	S	G	G	G	G
Template Predicted Secondary structure		.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
					284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.									.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		668
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		359

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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