 |
Job Description | P38036 | Confidence | 98.35% | Date | Thu Jan 5 11:57:49 GMT 2012 |
Rank | 146 | Aligned Residues | 80 |
% Identity | 19% | Template | c2pjrF_ |
PDB info |
PDB header:hydrolase/dna | Chain: F: PDB Molecule:protein (helicase pcra); |
PDBTitle: helicase product complex
|
Resolution | 2.90 Å |
|
 |
  |   |
294 | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | |
|
. | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Q | L | Q | V | L | V | D | A | L | P | V | A | P | G | L | T | V | I | E | A | P | T | G | S | G | K | T | E | T | A | L | A | Y | A | W | K | L | I | D | Q | Q | . |
. |
I | A | D | S | V | I | F | A | L | P | T | Q | A | T | A | N | A | M | L | T | R | M | E | A | S | A | S | H | L | F | S | S | P | N | L | I |
Query Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|   |   |   |   | . | . |   |   |   |
|
|
|   |   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |   |   |   |   | . | . |   |
|
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
N | K | E | Q | Q | E | A | V | R | T | T | E | G | P | . |
. |
L | L | I | M | A | G | A | G | S | G | K | T | R | V | L | T | H | R | I | A | Y | L | M | A | E | K | H | V | A | P | W | N | I | L | A | I | T | F | T | N | K | A | A | R | E | M | R | E | R | V | Q | S | L | L | G | G | A | A | E | D | V | W | I | S |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
| S | S |
| . | . |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  | T |  |  |  |  | T | T | T | S |
|
|
| G | G | G |  |  |  |  |  | S |
|  |  |  |  | T |  |  |  |  |  |  | T | T | T | S |
| T | T | S | T | T | S |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
|
| . | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
713 | . | . | . | . | . | . | 720 | . | . | . | . | . | . | |
|
. | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 |
  |
  |   |
372 | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
L | A | H | G |
Query Conservation |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|   |
|   |
Template Sequence |   |
T | F | H | S |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
791 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|