Job Description P38036 Confidence 99.96% Date Thu Jan 5 11:57:49 GMT 2012 Rank 43 Aligned Residues 313 % Identity 21% Template c2fwrA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad25; PDBTitle: structure of archaeoglobus fulgidis xpb Resolution 2.60 Å

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		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	N	G	Y	Q	P	R	Q	L	Q	V	L	V	D	A	L	P	V	A	P	G	L	T	V	I	E	A	P	T	G	S	G	K	T	E	T	A	L	A	Y	A	W	K	L	I	D	Q	Q	I	A	D	S	V	I	F	A	L	P	T	Q	A	T	A	N	A	M	L	T	R	M	E	A	S	A	S	H	L	F	S
Query Conservation
Alig confidence																																															.	.	.	.	.																								.	.	.	.	.
Template Conservation																																															.	.	.	.	.																								.	.	.	.	.
Template Sequence		F	D	A	E	I	S	L	R	D	Y	Q	E	K	A	L	E	R	W	L	V	D	K	R	G	C	I	V	L	P	T	G	S	G	K	T	H	V	A	M	A	A	I	N	E	L	.	.	.	.	.	S	T	P	T	L	I	V	V	P	T	L	A	L	A	E	Q	W	K	E	R	L	G	I	.	.	.	.	.	F	G
Template Known Secondary structure								B												T	T	T	T								T	T	S														.	.	.	.	.		S							S	S											G	G	G	.	.	.	.	.	G
Template Predicted Secondary structure																																															.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	N	L	I	L	A	H	G	N	S	R	F	N	H	L	F	Q	S	I	K	S	R	A	I	T	E	Q	G	Q	E	E	A	W	V	Q	C	C	Q	W	L	S	Q	S	N	K	K	V	F	L	G	Q	I	G	V	C	T	I	D	Q	V	L	I	S	V	L	P	V	K	H	R	F	I	R	G	L	G	I	G	R
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		E	E	Y	V	G	E	F	S	G	R	I	K	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	L	T	V	S	T	Y	D	S	A	.	.	.	.	.	.	.	.	Y	V	N	A	E	K	L	G	N	R	F
Template Known Secondary structure		G	G	G				B	S	S	S		B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										.	.	.	.	.	.	.	.			T					T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.																																					.	.	.	.	.	.	.	.	180	.	.									.	.	.	.	.	.	.	190	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	L	I	V	D	E	V	H	A	Y	D	T	Y	M	N	G	L	L	E	A	V	L	K	A	Q	A	D	V	G	G	S	V	I	L	L	S	A	T	L	P	M	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		M	L	L	I	F	D	E	V	H	H	L	P	A	E	S	Y	V	Q	I	A	Q	M	S	.	.	.	.	.	I	A	P	F	R	L	G	L	T	A	T	F	E	R	E	D	G	R	H	E	I	L	K	E	V	V	G	G	K	V	F	E	L	F	P	D	S	L	A	G	K	H	L	A	K	Y	T	I	K	R	I	F
Template Known Secondary structure		S						T	G	G	G	T	T	S	T	T	T						T		.	.	.	.	.			S							S					T	T	S	G	G	G	S					T													T	S					S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
						491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	K	Q	K	L	L	D	T	Y	G	L	H	T	D	P	V	E	N	N	S	A	Y	P	L	I	N	W	R	G	V	N	G	A	Q	R	F	D	L	L	A	H	P	E	Q	L	P	P	R	F	S	I	Q	P	E	P	I	C	L	A	D	M	L	P	D	L	T	M	L	E	R	M	I	A	A	A	N	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		V	P	L	A	E	D	E	R	V	E	Y	E	K	R	E	K	V	Y	K	Q	F	L	R	A	R	G	I	T	L	R	R	A	E	D	F	N	K	I	V	M	A	S	G	Y	D	E	R	A	Y	E	A	L	R	A	W	E	E	A	R	R	I	A	F	N	S	K	N	K	I	R	K	L	R	E	I	L	E	R	H	R
Template Known Secondary structure												T	T	T	T	T					S		S	S	S				T	T	T			S	S	S	T	T	T	T	T	T	T			S	S	S	S	S	T	T	T												S		S													T	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		G	A	Q	V	C	L	I	C	N	L	V	D	V	A	Q	V	C	Y	Q	R	L	K	E	L	N	N	T	Q	V	D	I	D	L	F	H	A	R	F	T	L	N	D	R	R	E	K	E	N	R	V	I	S	N	F	G	K	N	G	K	R	N	V	G	R	I	L	V	A	T	Q	V	V	E	Q	S	L	D	V	D	.
Query Conservation																																																																																	.
Alig confidence																								.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.																						.
Template Conservation																								.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Sequence		K	D	K	I	I	I	F	T	R	H	N	E	L	V	Y	R	I	S	K	V	F	L	.	.	.	.	.	.	.	.	I	P	A	I	T	H	R	T	S	R	E	E	R	E	E	I	L	E	G	F	.	.	.	.	.	.	.	.	R	T	G	R	F	R	A	I	V	S	S	Q	V	L	D	E	G	I	D	V	P	D
Template Known Secondary structure		S	S		B			B		S												T	T	.	.	.	.	.	.	.	.			B			S	S	S		S					T						.	.	.	.	.	.	.	.			S	S		S	B		B		S	S				S	S	S		S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370									.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390									.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		646	.	.	.	650	.	.	.	.	.			.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		F	D	W	L	I	T	Q	H	C	P	.	.	A	D	L	L	F	Q	R	L	G	R	L	H	R	H	H	R	K	Y	R
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		A	N	V	G	V	I	M	S	G	S	G	S	A	R	E	Y	I	Q	R	L	G	R	I	L	R	P	S	K	G	K	K
Template Known Secondary structure		B	S								S	S												S	B				T	T	T
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions