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Job DescriptionP38036
Confidence100.00%DateThu Jan 5 11:57:49 GMT 2012
Rank33Aligned Residues257
% Identity24%Templatec2f55C_
PDB info PDB header:hydrolase/dnaChain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   302.......310.........320.........330.........340.........350.........360.........370.........380.
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Query Sequence  ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNH
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Template Sequence  AVPQTFQVAHLHAPTGSGKSTKVPAAYAA. . . . . QGYKVLVLNPSVAATLGFGAYMSKAHG. . . . . IDPNIRTGVRTITT
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SS
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SSSSTTTTST.....TS

S
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   192.......200.........210.........220 .........230.........240....... ..250.........260.
 
   382.......390.........400.........410.........420.........430.........440.........450.........460.
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Query Sequence  LFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYM
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Template Sequence  G. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GSITYSTYGKFLADGGCSG. . . . . . . . GAYDIIICDECHSTDSTT
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S

TTSSST........T

STTTT

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   262 .......270.........280. ........290.........
 
   462.......470.... .....480.........490.........500.........510.........520.........530.........540
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Query Sequence  NGLLEAVLKAQAD. VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI
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Template Sequence  ILGIGTVLDQAETAGARLVVLATATPP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GSVTVPHPNIEEIGLSN
Template Known Secondary structure  TTSSTTTT


SS
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TT
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   300.........310.........320...... ...330.........340...
 
   541........550.........560.........570.........580.........590.........600.........610.........620
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Query Sequence  QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF
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Template Sequence  NGEIPFYGKAIPIEAI. . . . . . . . . KGGRHLIFCHSKKKCDELAAKLTGL. . . GLNAVAYYRGLDVSVI. . . . . . . . . . .
Template Known Secondary structure 
SSTT
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SST...T




B
SSS
TT
S...........
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   344.....350......... 360.........370.........380.... .....390.........400
 
   621........630.........640. ........650.. .......660.........670....
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Query Sequence  GKNGKRNVGRILVATQVVEQS. . . . . . . . . . . . . . . LDVDFDWLITQ. . . . . HCPADLLFQRLGRLHRHHRKYR
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Template Sequence  . . . . PPIGDVVVVATDALFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR. GRSGI
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SSSSB


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   401........410.........420.........430.........440.........450.........460.... .....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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