Job Description P38036 Confidence 100.00% Date Thu Jan 5 11:57:49 GMT 2012 Rank 1 Aligned Residues 418 % Identity 16% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.							.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		L	R	T	Y	F	Q	D	R	Q	Q	D	A	S	R	V	L	E	L	S	G	L	V	S	N	K	R	C	Y	E	G	V	H	A	L	L	D	N	G	Y	Q	P	R	Q	L	Q	V	L	V	D	A	L	P	V	.	.	.	.	.	.	A	P	G	L	T	V	I	E	A	P	T	G	S	G	K	T	E	T	A	L	A
Query Conservation																																																							.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	D	V	A	A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R
Template Known Secondary structure																		T	S																		T			S																			S	S	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	W	K	L	I	D	Q	Q	I	A	D	S	V	I	F	A	L	P	T	Q	A	T	A	N	A	M	L	T	R	M	E	A	S	A	S	H	L	F	S	S	P	N	L	I	L	A	H	G	N	S	R	F	N	H	L	F	Q	S	I	K	S	R	A	I	T	E	Q	G	Q	E	E	A	W	V	Q	C	C	Q	W
Query Conservation
Alig confidence											.	.																													.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.																													.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	F	L	A	V	D	N	H	.	.	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	.	.	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	T	.	.								S	S															S	T	T	T	T	.	.							S	T	T	S														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.																													.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		641	.	.	.	.	.	.	.	.			650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.			.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Q	S	N	K	K	V	F	L	G	Q	I	G	V	C	T	I	D	Q	V	L	I	S	V	L	P	V	K	H	R	F	I	R	G	L	G	I	G	R	S	V	L	I	V	D	E	V	H	A	Y	D	T	Y	M	N	G	L	L	E	A	V	L	K	A	Q	A	D	V	G	G	S	V	I	L	L	S	A	T	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.									.											.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.									.											.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	I	D	I	L	I	G	T	H	.	K	L	L	Q	S	D	V	K	F	K	.	.	.	.	.	.	.	.	.	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	.	.	.	.	.	R	A	N	V	D	I	L	T	L	T	A	T	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		S						T	.					S					S	.	.	.	.	.	.	.	.	.	S								S	G	G	G	S												.	.	.	.	.		T	T	S							S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.									.											.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
												704	.	.	.	.	.	710	.		.	.	.	.	.	.	.	.	720	.										.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.						.	.	.	.	750	.	.	.	.	.	.	.	.
			487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	M	K	Q	K	Q	K	L	L	D	T	Y	G	L	H	T	D	P	V	E	N	N	S	A	Y	P	L	I	N	W	R	G	V	N	G	A	Q	R	F	D	L	L	A	H	P	E	Q	L	P	P	R	F	S	I	Q	P	E	P	I	C	L	A	D	M	L	P	D	L	T	M	L	E	R	M	I	A	A	A	N
Query Conservation		.
Alig confidence		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	M	V	V	R	E	A	I	L	R	E	I	L
Template Known Secondary structure											T	T	T	S											B		B										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.																																.	.	.	.	.	.	800	.	.	.	.	.	.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	Q	V	C	L	I	C	N	L	V	D	V	A	Q	V	C	Y	Q	R	L	K	E	L	N	N	T	Q	V	D	I	D	L	F	H	A	R	F	T	L	N	D	R	R	E	K	E	N	R	V	I	S	N	F	G	K	N	G	K	R	N	V	G	R	I	L	V	A	T	Q	V	V	E	Q	S	L	D	V	D
Query Conservation
Alig confidence																													.																								.	.	.	.	.	.	.	.
Template Conservation																													.																								.	.	.	.	.	.	.	.
Template Sequence		R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	.	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	.	.	.	.	.	.	.	.	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P
Template Known Secondary structure		T	T										S	S														T	.	T	S							S	S														.	.	.	.	.	.	.	.		T	T	S							S	S	T	T	G	G	G	S			T
Template Predicted Secondary structure																													.																								.	.	.	.	.	.	.	.
Template SS confidence
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.		.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.									.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.
			646	.	.	.	650	.	.	.	.	.				.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure		.											.	.	.
Query SS confidence		.											.	.	.
Query Sequence		.	F	D	W	L	I	T	Q	H	C	P	.	.	.	A	D	L	L	F	Q	R	L	G	R	L	H	R	H	H	R	K	Y	R	P	A	G	F	E	I	P	V	A	T	I	L	L	P	D	G	E	G	Y	G	R	H	E	H	I	Y	S	N	V	R	V	M	W	R	T	Q	Q	H	I	E	E	L	N	G	A	S	L
Query Conservation		.											.	.	.
Alig confidence		.											.	.	.
Template Conservation
Template Sequence		T	A	N	T	I	I	I	E	R	A	D	H	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P	H	P	K	A	M	T	T	D	A	Q	K	R	L	E	A	I	A	S	L	E	D	L	G	A	G	F	A	L	A	T	H	D	L	E	I	R	G	A	G	E	L
Template Known Secondary structure		T							T	T	T	T	S	S										T	T			B	T	T	B											G	G	G	S												T	T			S	B	S
Template Predicted Secondary structure
Template SS confidence
		879	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	P	D	A	Y	R	Q	W	L	D	S	I	Y	D	D	A	E	M	D	E	P	E	W	V	G	N	G	M	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	E	E	Q	S	G	S	M	E	T	I	G	F	S	L	Y	M	E	L	L	E	N	A	V	D	A	L	K	A	G
Template Known Secondary structure																																T
Template Predicted Secondary structure
Template SS confidence
		959	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.