Job Description P38036 Confidence 100.00% Date Thu Jan 5 11:57:49 GMT 2012 Rank 30 Aligned Residues 328 % Identity 15% Template c1s2mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1; PDBTitle: crystal structure of the dead box protein dhh1p Resolution 2.10 Å

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		283	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure											.																																													.
Query SS confidence											.																																													.
Query Sequence		V	H	A	L	L	D	N	G	Y	.	Q	P	R	Q	L	Q	V	L	V	D	A	L	P	V	A	P	G	L	T	V	I	E	A	P	T	G	S	G	K	T	E	T	A	L	A	Y	A	W	K	L	I	D	Q	Q	.	I	A	D	S	V	I	F	A	L	P	T	Q	A	T	A	N	A	M	L	T	R	M	E	A	S
Query Conservation											.																																													.
Alig confidence											.																																													.
Template Conservation
Template Sequence		L	M	G	I	F	E	A	G	F	E	K	P	S	P	I	Q	E	E	A	I	P	V	A	I	T	G	R	D	I	L	A	R	A	K	N	G	T	G	K	T	A	A	F	V	I	P	T	L	E	K	V	K	P	K	L	N	K	I	Q	A	L	I	M	V	P	T	R	E	L	A	L	Q	T	S	Q	V	V	R	T	L
Template Known Secondary structure								T	T			S															T									T	T	S																T	T	S		S								S	S
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	H	L	F	S	S	P	N	L	I	L	A	H	G	N	S	R	F	N	H	L	F	Q	S	I	K	S	R	A	I	T	E	Q	G	Q	E	E	A	W	V	Q	C	C	Q	W	L	S	Q	S	N	K	K	V	F	L	G	Q	I	G	V	C	T	I	D	Q	V	L	I	S	V	L	P	V	K	H	R	F	I	R
Query Conservation
Alig confidence				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Sequence		G	K	.	.	H	C	G	I	S	C	M	V	T	T	G	G	T	N	L	R	D	D	I	L	R	L	N	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	I	L	V	G	T	P	G	R	V	L	D	L	A	S	R	K	V	A	D	L	.	.
Template Known Secondary structure		T	T	.	.	T	T	T								S	S	S									T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S															T	T		S			.	.
Template Predicted Secondary structure				.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		138	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																												.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	I	G	R	S	V	L	I	V	D	E	V	H	A	Y	D	T	Y	M	N	G	L	L	E	A	V	L	K	A	Q	A	D	V	G	G	S	V	I	L	L	S	A	T	L	P	M	K	Q	K	Q	K	L	L	D	T	Y	G	L	H	T	D	P	V	E	N	N	S	A	Y	P	L	I	N	W	R	G	V	N
Query Conservation
Alig confidence		.	.	.																																																																							.	.	.	.	.	.	.
Template Conservation		.	.	.																																																																							.	.	.	.	.	.	.
Template Sequence		.	.	.	S	D	C	S	L	F	I	M	D	E	A	D	K	M	L	S	R	D	F	K	T	I	I	E	Q	I	L	S	F	L	P	P	T	H	Q	S	L	L	F	S	A	T	F	P	L	T	V	K	E	F	M	V	K	H	L	H	K	P	Y	E	I	N	L	M	E	E	L	T	L	K	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	T	T								S					S	S												T	T	S		S	S								S															S	S					S			S	S		B		T	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																																							.	.	.	.	.	.	.
Template SS confidence
					187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	Q	R	F	D	L	L	A	H	P	E	Q	L	P	P	R	F	S	I	Q	P	E	P	I	C	L	A	D	M	L	P	D	L	T	M	L	E	R	M	I	A	A	A	N	A	G	A	Q	V	C	L	I	C	N	L	V	D	V	A	Q	V	C	Y	Q	R	L	K	E	L	N	N	T	Q	V	D	I	D	L	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	Q	Y	Y	A	F	V	E	E	R	Q	K	L	H	C	L	N	T	L	F	S	K	L	Q	I	N	Q	A	I	I	F	C	N	S	T	N	R	V	E	L	L	A	K	K	I	T	D	L	.	.	.	G	Y	S	C	Y	Y	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										G	G	G												S			S							S	S															.	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Template SS confidence
																						257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.	.	.	.	650	.	.	.	.	.			.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure																																															.											.	.
Query SS confidence																																															.											.	.
Query Sequence		H	A	R	F	T	L	N	D	R	R	E	K	E	N	R	V	I	S	N	F	G	K	N	G	K	R	N	V	G	R	I	L	V	A	T	Q	V	V	E	Q	S	L	D	V	D	.	F	D	W	L	I	T	Q	H	C	P	.	.	A	D	L	L	F	Q	R	L	G	R	L	H	R	H	H	R	K	Y	R	P	A	G
Query Conservation																																															.											.	.
Alig confidence																		.	.	.	.	.	.	.	.																						.											.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		H	A	R	M	K	Q	Q	E	R	N	K	V	F	H	E	F	.	.	.	.	.	.	.	.	R	Q	G	K	V	R	T	L	V	C	S	D	L	L	T	R	G	I	D	I	Q	A	V	N	V	V	I	N	F	D	F	P	K	T	A	E	T	Y	L	H	R	I	G	R	S	G	R	F	G	H	L	G	L	A	I	N
Template Known Secondary structure			T	T	S													.	.	.	.	.	.	.	.		T	T	S	S	S					S	S		S	S	S	S				T	T							S	S			S	S										B	S	S		T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.									330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		678	.	680	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	I	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	N	W	N
Template Known Secondary structure					G	G
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions