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Job DescriptionP38036
Confidence96.81%DateThu Jan 5 11:57:49 GMT 2012
Rank202Aligned Residues118
% Identity24%Templatec1jr3E_
PDB info PDB header:transferaseChain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   295....300...... ...310.........320.........330......... 340.........350...
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Query Sequence  QLQVLVDALPVA. . PGLTVIEAPTGSGKTETALAYAWKLIDQQIADS. . . . . . . . . . . . . . . . . . . VIFALPTQATANAM
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Template Sequence  DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLG
Template Known Secondary structure  TTTTTS


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   10.........20.........30.........40.........50.........60.........70.........80.........
 
   354.....360.........370.........380.........390.........400.........410.........420.........430...
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Query Sequence  LTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP
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Template Sequence  VDAVREVTEKLNEHARL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SS

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   90.........100......
 
   434.....440.........450.........460.........470.........480.......
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Query Sequence  VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP
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Template Sequence  . . . . . . . . . . GGAKVVWVTDAALLTDAAANALLKTLE. . EPPAETWFFLATREP
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   107..110.........120.........130... ......140........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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