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Job DescriptionP38036
Confidence100.00%DateThu Jan 5 11:57:49 GMT 2012
Rank23Aligned Residues274
% Identity19%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   303......310.........320.........330.........340.........350.........360.........370.........380..
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Query Sequence  LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHL
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Template Sequence  VPQSFQVAHLHAPTGSGKSTKVPAAYAA. . . . . QGYKVLVLNPSVAATLGFGAYMSKAHG. . . . . VDPNIRTGVRTITTG
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   193......200.........210.........220 .........230.........240....... ..250.........260..
 
   383......390.........400.........410.........420.........430.........440.........450.........460..
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Query Sequence  FQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SPITYSTYGKFLADGGSGG. . . . . . . . . AYDIIICDECHSTDATSI
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   263......270.........280. ........290.........
 
   463......470..... ....480.........490.........500.........510.........520.........530.........540.
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Query Sequence  GLLEAVLKAQADV. GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ
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Template Sequence  LGIGTVLDQAETAGARLVVLATATPPG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SVTVPHPN
Template Known Secondary structure  TTTTT
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   301........310.........320....... ..330.....
 
   542.......550.........560.........570.........580.........590.........600.........610....... .
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Query Sequence  PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVI. . . S
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Template Sequence  IEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVAL. . . GINAVAYYRGLDVSVIPTSGDVVVVATD
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   336...340.........350.........360.........370.........380.... .....390.........400.........410..
 
   619620.........630.........640....... ..650.........660.........670.........680..
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Query Sequence  NFGKNGKRNVGRILVATQVVEQSLDVDFD. . . . . WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV
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Template Sequence  AL. . . . FTGDFDSVIDCNTVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR. GKPGIYRFVAPGE
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   413. .....420.........430.........440.........450.........460... ......470......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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